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comparison 16_fgsea/GSEA.xml~ @ 2:d91ddc13f8a8 draft

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author dktanwar
date Mon, 11 Dec 2017 09:43:17 -0500
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1:600fa48cb32e 2:d91ddc13f8a8
1 <tool id="GSEA" name="Gene Set Enrichment Analysis" version="0.1.0">
2 <command detect_errors="exit_code"><![CDATA[
3 RScript $__tool_directory__/GSEA.R --input1 $Ranked_list --input2 $Pathway_database --output $output
4 ]]></command>
5 <inputs>
6 <param type="data" name="Ranked_list" format="txt" />
7 <param type="data" name="Pathway_database" format="txt" />
8 </inputs>
9 <outputs>
10 <data name="Results" format="txt" />
11 </outputs>
12 <tests>
13 <test>
14 <param name="Ranked_list" value="ranked_genes_list.rnk"/>
15 <param name="Pathway_database" value="ouse.gmt"/>
16 <output name="output" file="GSEA_results.txt"/>
17 </test>
18 </tests>
19 <help><![CDATA[
20 Write the tool help section here.
21 ]]></help>
22 <citations>
23 <citation type="bibtex">
24 @misc{github01_mismatch_removal,
25 author = {LastTODO, FirstTODO},
26 year = {TODO},
27 title = {01_mismatch_removal},
28 publisher = {GitHub},
29 journal = {GitHub repository},
30 url = {https://github.com/dktanwar/Galaxy_Tools/tree/master/01_mismatch_removal},
31 }</citation>
32 </citations>
33 </tool>