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comparison pmids_to_pubtator_matrix.xml @ 2:ada4c7b3fc39 draft default tip

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"planemo upload for repository https://github.com/dlal-group/simtext commit 63f67ee02be2eb4323a5ba5dcdd33d1fd0b7c24e"
author dlalgroup
date Thu, 08 Oct 2020 05:39:58 +0000
parents 3f4adc85ba5d
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1:f55a02423699 2:ada4c7b3fc39
14 '${__tool_directory__}/pmids_to_pubtator_matrix.R' 14 '${__tool_directory__}/pmids_to_pubtator_matrix.R'
15 --input '$input' 15 --input '$input'
16 --output '$output' 16 --output '$output'
17 --number '$number' 17 --number '$number'
18 $byid 18 $byid
19 --categories
19 #for $category in $categories: 20 #for $category in $categories:
20 --categories '$category' 21 '$category'
21 #end for 22 #end for
22 ]]> 23 ]]>
23 </command> 24 </command>
24 <inputs> 25 <inputs>
25 <param argument="--input" label="Input file" name="input" optional="false" type="data" format="tabular" help="input"/> 26 <param argument="--input" label="Input file" name="input" optional="false" type="data" format="tabular" help="input"/>
26 <param argument="--categories" name="categories" type="select" label="categories" multiple="true" > 27 <param argument="--categories" name="categories" type="select" label="categories" multiple="true" display="checkboxes">
27 <option value="Gene">Genes</option> 28 <option value="Gene">Genes</option>
28 <option value="Disease">Diseases</option> 29 <option value="Disease">Diseases</option>
29 <option value="Mutation">Mutations</option> 30 <option value="Mutation">Mutations</option>
30 <option value="Chemical">Chemicals</option> 31 <option value="Chemical">Chemicals</option>
31 <option value="Species">Species</option> 32 <option value="Species">Species</option>