# HG changeset patch
# User dlalgroup
# Date 1602135598 0
# Node ID ada4c7b3fc39bff1ea774c1923a3dffbaeda6909
# Parent  f55a0242369955c8b9410246101f7c5510adb75c
"planemo upload for repository https://github.com/dlal-group/simtext commit 63f67ee02be2eb4323a5ba5dcdd33d1fd0b7c24e"

diff -r f55a02423699 -r ada4c7b3fc39 pmids_to_pubtator_matrix.xml
--- a/pmids_to_pubtator_matrix.xml	Thu Sep 24 04:28:18 2020 +0000
+++ b/pmids_to_pubtator_matrix.xml	Thu Oct 08 05:39:58 2020 +0000
@@ -16,14 +16,15 @@
       --output '$output'
       --number '$number'
       $byid
+      --categories 
       #for $category in $categories:
-      --categories '$category'
+      '$category'
       #end for
       ]]>
     </command>
     <inputs>
       <param argument="--input" label="Input file" name="input" optional="false" type="data" format="tabular" help="input"/>
-      <param argument="--categories" name="categories" type="select" label="categories" multiple="true" >
+      <param argument="--categories" name="categories" type="select" label="categories" multiple="true" display="checkboxes">
         <option value="Gene">Genes</option>
         <option value="Disease">Diseases</option>
         <option value="Mutation">Mutations</option>