# HG changeset patch
# User dlalgroup
# Date 1600926298 0
# Node ID d7b190591e63cebc9bd904daa3e6111ab6033f4f
# Parent  429b1df6b7a94c44bbcf4863a9797b5afbfc527e
"planemo upload for repository https://github.com/dlal-group/simtext commit fd3f5b7b0506fbc460f2a281f694cb57f1c90a3c-dirty"

diff -r 429b1df6b7a9 -r d7b190591e63 simtext_app.xml
--- a/simtext_app.xml	Thu Sep 24 04:32:14 2020 +0000
+++ b/simtext_app.xml	Thu Sep 24 05:44:58 2020 +0000
@@ -32,16 +32,13 @@
         </test>-->
     </tests>
     <help><![CDATA[
-
-The tool enables the exploration of data generated by ‘text_to_wordmatrix’ or ‘pmids_to_pubtator_matrix’ tools in a Shiny local instance. The following features can be generated: 1) word clouds for each initial search query, 2) dimension reduction and hierarchical clustering of binary matrices, and 3) tables with words and their frequency in the search queries.
+    The tool enables the exploration of data generated by ‘text_to_wordmatrix’ or ‘pmids_to_pubtator_matrix’ tools in a Shiny local instance. The following features can be generated: 1) word clouds for each initial search query, 2) dimension reduction and hierarchical clustering of binary matrices, and 3) tables with words and their frequency in the search queries.
 
-Input 1, a table with:
-    - A column with initial search queries starting with "ID\_" (e.g., "ID_gene" if initial search queries were genes).
-    - Column(s) with grouping factor(s) to compare pre-existing categories of the initial search queries with the grouping based on text. The column names should start with "GROUPING\_". If the column name is "GROUPING_disorder", "disorder" will be shown as a grouping variable in the app.
-Input 2:
-  The output of 'text_to_wordmatrix' or 'pmids_to_pubtator_matrix' tools, or a binary matrix.
-
-
-        ]]></help>
+    Input 1, a table with:
+        - A column with initial search queries starting with "ID\_" (e.g., "ID_gene" if initial search queries were genes).
+        - Column(s) with grouping factor(s) to compare pre-existing categories of the initial search queries with the grouping based on text. The column names should start with "GROUPING\_". If the column name is "GROUPING_disorder", "disorder" will be shown as a grouping variable in the app.
+    Input 2:
+      The output of 'text_to_wordmatrix' or 'pmids_to_pubtator_matrix' tools, or a binary matrix.]]>    
+    </help>
     <expand macro="citations"/>
 </tool>
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