Mercurial > repos > drosofff > blast_to_scaffold

diff blast_to_scaffold.xml @ 4:3288cc5a57e5 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/blast_to_scaffold commit fb47b9859a0703f1fa4a1e76b75b9dae29ca8329
author drosofff
date Fri, 25 Mar 2016 19:21:26 -0400
parents e279e53a3fde
children 81ffa74cf96e
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line diff
--- a/blast_to_scaffold.xml	Fri Mar 25 19:14:20 2016 -0400
+++ b/blast_to_scaffold.xml	Fri Mar 25 19:21:26 2016 -0400
@@ -1,12 +1,14 @@
-<tool id="blast2scaffold" name="blast_to_scaffold" version="0.1.0">
+<tool id="blast2scaffold" name="blast_to_scaffold" version="0.9.0">
 <description>Generate DNA scaffold from blastn or tblastx alignment of Contigs</description>
 <requirements>
 </requirements>
 <command interpreter="python">
         blast_to_scaffold.py --sequences "$sequences"
-                              --guideSequence "$guideSequence"
-                              --blast-tab "$blast_tab"
-                              --output "$output"
+                             --guideSequence "$guideSequence"
+                             --blast-tab "$blast_tab"
+                             --output "$output"
+                             --scaffold_prefix "$sequences.element_identifier"
+                             --scaffold_suffix "$guideSequence.element_identifier"
 </command>
 <inputs>
 <param name="sequences" type="data" format="fasta" label="Select a fasta contigs file"/>