Mercurial > repos > drosofff > blastx_to_scaffold
changeset 1:940c0c669e96 draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/blastx_to_scaffold commit b6de14061c479f0418cd89e26d6f5ac26e565a07
| author | drosofff |
|---|---|
| date | Wed, 09 Nov 2016 11:39:20 -0500 |
| parents | a2e034f1638e |
| children | |
| files | blastx_to_scaffold.xml |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/blastx_to_scaffold.xml Sun Jun 21 14:40:10 2015 -0400 +++ b/blastx_to_scaffold.xml Wed Nov 09 11:39:20 2016 -0500 @@ -30,7 +30,7 @@ **What it Does** -This tool start from DNA contigs that aligned to a subject protein sequence through blastx. +This tool starts from DNA contigs that aligned to a subject protein sequence through blastx. The contigs must be provided in fasta format. The blastx output must be tabular, the 12 standard column plus column 13 with the length of the blastx subject. The final scaffold is a DNA sequence. Sequences of the subject protein which were not aligned to the contigs are replaced by Ns in this scaffold.