Mercurial > repos > drosofff > metavisitor_workflows
comparison Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-3.ga @ 2:48b020a0d2f7 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit d5feabb3309f2da09ba15b5fe818d0a7b30f3266
author | drosofff |
---|---|
date | Fri, 13 May 2016 05:46:40 -0400 |
parents | 4a47903bb4df |
children | ba15c770fd40 |
comparison
equal
deleted
inserted
replaced
1:3d8eb2c065c7 | 2:48b020a0d2f7 |
---|---|
109 "output_name": "outfilename" | 109 "output_name": "outfilename" |
110 } | 110 } |
111 }, | 111 }, |
112 "tool_errors": null, | 112 "tool_errors": null, |
113 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/fetch_fasta_from_ncbi/retrieve_fasta_from_NCBI/0.9.4", | 113 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/fetch_fasta_from_ncbi/retrieve_fasta_from_NCBI/0.9.4", |
114 "tool_shed_repository": { | |
115 "changeset_revision": "befdb392fece", | |
116 "name": "fetch_fasta_from_ncbi", | |
117 "owner": "drosofff", | |
118 "tool_shed": "toolshed.g2.bx.psu.edu" | |
119 }, | |
114 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"queryString\": \"\\\"${reference_virus}\\\"\", \"dbname\": \"\\\"nuccore\\\"\"}", | 120 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"queryString\": \"\\\"${reference_virus}\\\"\", \"dbname\": \"\\\"nuccore\\\"\"}", |
115 "tool_version": "0.9.4", | 121 "tool_version": "0.9.4", |
116 "type": "tool", | 122 "type": "tool", |
117 "uuid": "9f37ac80-1ccf-4b1a-8f31-41b01bf249fb", | 123 "uuid": "9f37ac80-1ccf-4b1a-8f31-41b01bf249fb", |
118 "workflow_outputs": [] | 124 "workflow_outputs": [] |
206 "output_name": "output_unaligned_reads_r" | 212 "output_name": "output_unaligned_reads_r" |
207 } | 213 } |
208 }, | 214 }, |
209 "tool_errors": null, | 215 "tool_errors": null, |
210 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.2.6.2", | 216 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.2.6.2", |
211 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"library\": \"{\\\"aligned_file\\\": \\\"True\\\", \\\"unaligned_file\\\": \\\"False\\\", \\\"type\\\": \\\"single\\\", \\\"__current_case__\\\": 0, \\\"input_1\\\": null}\", \"reference_genome\": \"{\\\"source\\\": \\\"indexed\\\", \\\"__current_case__\\\": 0, \\\"index\\\": \\\"vir1\\\"}\", \"rg\": \"{\\\"rg_selector\\\": \\\"do_not_set\\\", \\\"__current_case__\\\": 3}\", \"save_mapping_stats\": \"\\\"False\\\"\", \"analysis_type\": \"{\\\"alignment_options\\\": {\\\"alignment_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"effort_options\\\": {\\\"effort_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"sam_options\\\": {\\\"sam_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"other_options\\\": {\\\"other_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"scoring_options\\\": {\\\"scoring_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"analysis_type_selector\\\": \\\"full\\\", \\\"reporting_options\\\": {\\\"k\\\": \\\"1\\\", \\\"reporting_options_selector\\\": \\\"k\\\", \\\"__current_case__\\\": 1}, \\\"__current_case__\\\": 1, \\\"sam_opt\\\": \\\"True\\\", \\\"input_options\\\": {\\\"input_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}}\"}", | 217 "tool_shed_repository": { |
218 "changeset_revision": "a9d4f71dbfb0", | |
219 "name": "bowtie2", | |
220 "owner": "devteam", | |
221 "tool_shed": "toolshed.g2.bx.psu.edu" | |
222 }, | |
223 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"library\": \"{\\\"aligned_file\\\": \\\"true\\\", \\\"unaligned_file\\\": \\\"false\\\", \\\"type\\\": \\\"single\\\", \\\"__current_case__\\\": 0, \\\"input_1\\\": null}\", \"reference_genome\": \"{\\\"source\\\": \\\"indexed\\\", \\\"__current_case__\\\": 0, \\\"index\\\": \\\"vir1\\\"}\", \"rg\": \"{\\\"rg_selector\\\": \\\"do_not_set\\\", \\\"__current_case__\\\": 3}\", \"save_mapping_stats\": \"\\\"false\\\"\", \"analysis_type\": \"{\\\"alignment_options\\\": {\\\"__current_case__\\\": 1, \\\"alignment_options_selector\\\": \\\"no\\\"}, \\\"effort_options\\\": {\\\"effort_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"sam_options\\\": {\\\"sam_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"other_options\\\": {\\\"other_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"scoring_options\\\": {\\\"scoring_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"analysis_type_selector\\\": \\\"full\\\", \\\"reporting_options\\\": {\\\"k\\\": \\\"1\\\", \\\"reporting_options_selector\\\": \\\"k\\\", \\\"__current_case__\\\": 1}, \\\"__current_case__\\\": 1, \\\"sam_opt\\\": \\\"true\\\", \\\"input_options\\\": {\\\"input_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}}\"}", | |
212 "tool_version": "2.2.6.2", | 224 "tool_version": "2.2.6.2", |
213 "type": "tool", | 225 "type": "tool", |
214 "uuid": "d8ac3b32-882b-4761-affd-b3f71ddb3fcb", | 226 "uuid": "d8ac3b32-882b-4761-affd-b3f71ddb3fcb", |
215 "workflow_outputs": [] | 227 "workflow_outputs": [] |
216 }, | 228 }, |
238 "top": 1043.96875 | 250 "top": 1043.96875 |
239 }, | 251 }, |
240 "post_job_actions": {}, | 252 "post_job_actions": {}, |
241 "tool_errors": null, | 253 "tool_errors": null, |
242 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.07", | 254 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.07", |
243 "tool_state": "{\"__page__\": 0, \"mask_data_file\": \"null\", \"title\": \"\\\"reference virus blast nucleotide database\\\"\", \"dbtype\": \"\\\"nucl\\\"\", \"__rerun_remap_job_id__\": null, \"hash_index\": \"\\\"True\\\"\", \"tax\": \"{\\\"taxselect\\\": \\\"\\\", \\\"__current_case__\\\": 0}\", \"input_file\": \"null\", \"parse_seqids\": \"\\\"False\\\"\"}", | 255 "tool_shed_repository": { |
256 "changeset_revision": "7f3c448e119b", | |
257 "name": "ncbi_blast_plus", | |
258 "owner": "devteam", | |
259 "tool_shed": "toolshed.g2.bx.psu.edu" | |
260 }, | |
261 "tool_state": "{\"__page__\": 0, \"mask_data_file\": \"null\", \"title\": \"\\\"reference virus blast nucleotide database\\\"\", \"dbtype\": \"\\\"nucl\\\"\", \"__rerun_remap_job_id__\": null, \"hash_index\": \"\\\"true\\\"\", \"tax\": \"{\\\"__current_case__\\\": 0, \\\"taxselect\\\": \\\"\\\"}\", \"input_file\": \"null\", \"parse_seqids\": \"\\\"false\\\"\"}", | |
244 "tool_version": "0.1.07", | 262 "tool_version": "0.1.07", |
245 "type": "tool", | 263 "type": "tool", |
246 "uuid": "6271cf86-2fa0-4f3c-8870-d1f315fb46b8", | 264 "uuid": "6271cf86-2fa0-4f3c-8870-d1f315fb46b8", |
247 "workflow_outputs": [ | 265 "workflow_outputs": [ |
248 { | 266 { |
291 "output_name": "trinity_log" | 309 "output_name": "trinity_log" |
292 } | 310 } |
293 }, | 311 }, |
294 "tool_errors": null, | 312 "tool_errors": null, |
295 "tool_id": "toolshed.g2.bx.psu.edu/repos/anmoljh/trinityrnaseq/trinityrnaseq/r20140717", | 313 "tool_id": "toolshed.g2.bx.psu.edu/repos/anmoljh/trinityrnaseq/trinityrnaseq/r20140717", |
314 "tool_shed_repository": { | |
315 "changeset_revision": "0a576a57a9eb", | |
316 "name": "trinityrnaseq", | |
317 "owner": "anmoljh", | |
318 "tool_shed": "toolshed.g2.bx.psu.edu" | |
319 }, | |
296 "tool_state": "{\"__page__\": 0, \"JM\": \"\\\"1G\\\"\", \"__rerun_remap_job_id__\": null, \"additional_params\": \"{\\\"use_additional\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"inputs\": \"{\\\"paired_or_single\\\": \\\"single\\\", \\\"input\\\": null, \\\"path_reinforcement_distance\\\": \\\"40\\\", \\\"__current_case__\\\": 1, \\\"library_type\\\": \\\"None\\\"}\"}", | 320 "tool_state": "{\"__page__\": 0, \"JM\": \"\\\"1G\\\"\", \"__rerun_remap_job_id__\": null, \"additional_params\": \"{\\\"use_additional\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"inputs\": \"{\\\"paired_or_single\\\": \\\"single\\\", \\\"input\\\": null, \\\"path_reinforcement_distance\\\": \\\"40\\\", \\\"__current_case__\\\": 1, \\\"library_type\\\": \\\"None\\\"}\"}", |
297 "tool_version": "r20140717", | 321 "tool_version": "r20140717", |
298 "type": "tool", | 322 "type": "tool", |
299 "uuid": "400add87-e5bc-470a-bc3c-6d7bbff41b78", | 323 "uuid": "400add87-e5bc-470a-bc3c-6d7bbff41b78", |
300 "workflow_outputs": [] | 324 "workflow_outputs": [] |
329 "output_name": "out_file1" | 353 "output_name": "out_file1" |
330 } | 354 } |
331 }, | 355 }, |
332 "tool_errors": null, | 356 "tool_errors": null, |
333 "tool_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/regex_find_replace/regex1/0.1.0", | 357 "tool_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/regex_find_replace/regex1/0.1.0", |
358 "tool_shed_repository": { | |
359 "changeset_revision": "9ea374bb0350", | |
360 "name": "regex_find_replace", | |
361 "owner": "jjohnson", | |
362 "tool_shed": "toolshed.g2.bx.psu.edu" | |
363 }, | |
334 "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"checks\": \"[{\\\"__index__\\\": 0, \\\"replacement\\\": \\\">\\\\\\\\1\\\", \\\"pattern\\\": \\\">(.+) len=.+\\\"}]\", \"__page__\": 0}", | 364 "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"checks\": \"[{\\\"__index__\\\": 0, \\\"replacement\\\": \\\">\\\\\\\\1\\\", \\\"pattern\\\": \\\">(.+) len=.+\\\"}]\", \"__page__\": 0}", |
335 "tool_version": "0.1.0", | 365 "tool_version": "0.1.0", |
336 "type": "tool", | 366 "type": "tool", |
337 "uuid": "6d243d3c-511c-465a-93ee-f8df9657d4d7", | 367 "uuid": "6d243d3c-511c-465a-93ee-f8df9657d4d7", |
338 "workflow_outputs": [] | 368 "workflow_outputs": [] |
373 "output_name": "output1" | 403 "output_name": "output1" |
374 } | 404 } |
375 }, | 405 }, |
376 "tool_errors": null, | 406 "tool_errors": null, |
377 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.07", | 407 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.07", |
408 "tool_shed_repository": { | |
409 "changeset_revision": "7f3c448e119b", | |
410 "name": "ncbi_blast_plus", | |
411 "owner": "devteam", | |
412 "tool_shed": "toolshed.g2.bx.psu.edu" | |
413 }, | |
378 "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"__page__\": 0, \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"blast_type\": \"\\\"blastn\\\"\", \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"query\": \"null\"}", | 414 "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"__page__\": 0, \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"blast_type\": \"\\\"blastn\\\"\", \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"query\": \"null\"}", |
379 "tool_version": "0.1.07", | 415 "tool_version": "0.1.07", |
380 "type": "tool", | 416 "type": "tool", |
381 "uuid": "0e8b01bc-d919-4bc4-ba28-c2fde37de6b6", | 417 "uuid": "0e8b01bc-d919-4bc4-ba28-c2fde37de6b6", |
382 "workflow_outputs": [ | 418 "workflow_outputs": [ |
443 "output_name": "un_sequences" | 479 "output_name": "un_sequences" |
444 } | 480 } |
445 }, | 481 }, |
446 "tool_errors": null, | 482 "tool_errors": null, |
447 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_blastparser_and_hits/BlastParser_and_hits/2.4.3", | 483 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_blastparser_and_hits/BlastParser_and_hits/2.4.3", |
484 "tool_shed_repository": { | |
485 "changeset_revision": "6dfa79a6908a", | |
486 "name": "msp_blastparser_and_hits", | |
487 "owner": "drosofff", | |
488 "tool_shed": "toolshed.g2.bx.psu.edu" | |
489 }, | |
448 "tool_state": "{\"__page__\": 0, \"flanking\": \"\\\"0\\\"\", \"additional_filters\": \"{\\\"filter_term_out\\\": \\\"Patent\\\", \\\"filter_relativeCov\\\": \\\"0.0\\\", \\\"filter_meanScore\\\": \\\"100.0\\\", \\\"use_filters\\\": \\\"yes\\\", \\\"__current_case__\\\": 1, \\\"filter_term_in\\\": \\\"${target_virus}\\\", \\\"filter_maxScore\\\": \\\"0.0\\\"}\", \"__rerun_remap_job_id__\": null, \"mode\": \"\\\"short\\\"\", \"sequences\": \"null\", \"blast\": \"null\"}", | 490 "tool_state": "{\"__page__\": 0, \"flanking\": \"\\\"0\\\"\", \"additional_filters\": \"{\\\"filter_term_out\\\": \\\"Patent\\\", \\\"filter_relativeCov\\\": \\\"0.0\\\", \\\"filter_meanScore\\\": \\\"100.0\\\", \\\"use_filters\\\": \\\"yes\\\", \\\"__current_case__\\\": 1, \\\"filter_term_in\\\": \\\"${target_virus}\\\", \\\"filter_maxScore\\\": \\\"0.0\\\"}\", \"__rerun_remap_job_id__\": null, \"mode\": \"\\\"short\\\"\", \"sequences\": \"null\", \"blast\": \"null\"}", |
449 "tool_version": "2.4.3", | 491 "tool_version": "2.4.3", |
450 "type": "tool", | 492 "type": "tool", |
451 "uuid": "4acd0e30-b867-43e3-99e9-88d0c602c8f3", | 493 "uuid": "4acd0e30-b867-43e3-99e9-88d0c602c8f3", |
452 "workflow_outputs": [ | 494 "workflow_outputs": [ |
494 "output_name": "out_file1" | 536 "output_name": "out_file1" |
495 } | 537 } |
496 }, | 538 }, |
497 "tool_errors": null, | 539 "tool_errors": null, |
498 "tool_id": "toolshed.g2.bx.psu.edu/repos/mvdbeek/concatenate_multiple_datasets/cat_multiple/0.2", | 540 "tool_id": "toolshed.g2.bx.psu.edu/repos/mvdbeek/concatenate_multiple_datasets/cat_multiple/0.2", |
541 "tool_shed_repository": { | |
542 "changeset_revision": "201c568972c3", | |
543 "name": "concatenate_multiple_datasets", | |
544 "owner": "mvdbeek", | |
545 "tool_shed": "toolshed.g2.bx.psu.edu" | |
546 }, | |
499 "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", | 547 "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", |
500 "tool_version": "0.2", | 548 "tool_version": "0.2", |
501 "type": "tool", | 549 "type": "tool", |
502 "uuid": "4706c38f-6012-41f5-a415-09db4d3756f3", | 550 "uuid": "4706c38f-6012-41f5-a415-09db4d3756f3", |
503 "workflow_outputs": [ | 551 "workflow_outputs": [ |
542 "output_name": "output1" | 590 "output_name": "output1" |
543 } | 591 } |
544 }, | 592 }, |
545 "tool_errors": null, | 593 "tool_errors": null, |
546 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.07", | 594 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.07", |
595 "tool_shed_repository": { | |
596 "changeset_revision": "7f3c448e119b", | |
597 "name": "ncbi_blast_plus", | |
598 "owner": "devteam", | |
599 "tool_shed": "toolshed.g2.bx.psu.edu" | |
600 }, | |
547 "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"__page__\": 0, \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"blast_type\": \"\\\"blastn\\\"\", \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"query\": \"null\"}", | 601 "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"__page__\": 0, \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"blast_type\": \"\\\"blastn\\\"\", \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"query\": \"null\"}", |
548 "tool_version": "0.1.07", | 602 "tool_version": "0.1.07", |
549 "type": "tool", | 603 "type": "tool", |
550 "uuid": "6aad301d-b295-43af-ae9b-a1ec6f41da49", | 604 "uuid": "6aad301d-b295-43af-ae9b-a1ec6f41da49", |
551 "workflow_outputs": [] | 605 "workflow_outputs": [] |
582 "top": 1042.984375 | 636 "top": 1042.984375 |
583 }, | 637 }, |
584 "post_job_actions": {}, | 638 "post_job_actions": {}, |
585 "tool_errors": null, | 639 "tool_errors": null, |
586 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/blast_to_scaffold/blast2scaffold/0.9.0", | 640 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/blast_to_scaffold/blast2scaffold/0.9.0", |
641 "tool_shed_repository": { | |
642 "changeset_revision": "3288cc5a57e5", | |
643 "name": "blast_to_scaffold", | |
644 "owner": "drosofff", | |
645 "tool_shed": "toolshed.g2.bx.psu.edu" | |
646 }, | |
587 "tool_state": "{\"__page__\": 0, \"guideSequence\": \"null\", \"blast_tab\": \"null\", \"__rerun_remap_job_id__\": null, \"sequences\": \"null\"}", | 647 "tool_state": "{\"__page__\": 0, \"guideSequence\": \"null\", \"blast_tab\": \"null\", \"__rerun_remap_job_id__\": null, \"sequences\": \"null\"}", |
588 "tool_version": "0.9.0", | 648 "tool_version": "0.9.0", |
589 "type": "tool", | 649 "type": "tool", |
590 "uuid": "3aea0893-96a6-427e-806b-4de7f6a3b656", | 650 "uuid": "3aea0893-96a6-427e-806b-4de7f6a3b656", |
591 "workflow_outputs": [ | 651 "workflow_outputs": [ |
628 "output_name": "out_file1" | 688 "output_name": "out_file1" |
629 } | 689 } |
630 }, | 690 }, |
631 "tool_errors": null, | 691 "tool_errors": null, |
632 "tool_id": "toolshed.g2.bx.psu.edu/repos/mvdbeek/concatenate_multiple_datasets/cat_multiple/0.2", | 692 "tool_id": "toolshed.g2.bx.psu.edu/repos/mvdbeek/concatenate_multiple_datasets/cat_multiple/0.2", |
693 "tool_shed_repository": { | |
694 "changeset_revision": "201c568972c3", | |
695 "name": "concatenate_multiple_datasets", | |
696 "owner": "mvdbeek", | |
697 "tool_shed": "toolshed.g2.bx.psu.edu" | |
698 }, | |
633 "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", | 699 "tool_state": "{\"input\": \"null\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", |
634 "tool_version": "0.2", | 700 "tool_version": "0.2", |
635 "type": "tool", | 701 "type": "tool", |
636 "uuid": "ec943b0c-8635-4f10-80fe-7b71d478d555", | 702 "uuid": "ec943b0c-8635-4f10-80fe-7b71d478d555", |
637 "workflow_outputs": [ | 703 "workflow_outputs": [ |