comparison Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-2.ga @ 3:ba15c770fd40 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
author drosofff
date Thu, 17 Nov 2016 07:27:04 -0500
parents 48b020a0d2f7
children 46614c7dd247
comparison
equal deleted inserted replaced
2:48b020a0d2f7 3:ba15c770fd40
411 } 411 }
412 ] 412 ]
413 }, 413 },
414 "7": { 414 "7": {
415 "annotation": "", 415 "annotation": "",
416 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.4", 416 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.5",
417 "id": 7, 417 "id": 7,
418 "input_connections": { 418 "input_connections": {
419 "inputs_0|input": { 419 "inputs_0|input": {
420 "id": 5, 420 "id": 5,
421 "output_name": "output" 421 "output_name": "output"
434 "left": 1346.5625, 434 "left": 1346.5625,
435 "top": 731.578125 435 "top": 731.578125
436 }, 436 },
437 "post_job_actions": {}, 437 "post_job_actions": {},
438 "tool_errors": null, 438 "tool_errors": null,
439 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.4", 439 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.5",
440 "tool_shed_repository": { 440 "tool_shed_repository": {
441 "changeset_revision": "f08d9c814ffb", 441 "changeset_revision": "dc684e37f668",
442 "name": "msp_oases", 442 "name": "msp_oases",
443 "owner": "drosofff", 443 "owner": "drosofff",
444 "tool_shed": "toolshed.g2.bx.psu.edu" 444 "tool_shed": "toolshed.g2.bx.psu.edu"
445 }, 445 },
446 "tool_state": "{\"__page__\": 0, \"inputs\": \"[{\\\"__index__\\\": 0, \\\"input\\\": null}]\", \"end_hash_length\": \"\\\"69\\\"\", \"__rerun_remap_job_id__\": null, \"start_hash_length\": \"\\\"13\\\"\"}", 446 "tool_state": "{\"__page__\": 0, \"inputs\": \"[{\\\"__index__\\\": 0, \\\"input\\\": null}]\", \"end_hash_length\": \"\\\"69\\\"\", \"__rerun_remap_job_id__\": null, \"start_hash_length\": \"\\\"13\\\"\"}",
447 "tool_version": "1.1.4", 447 "tool_version": "1.1.5",
448 "type": "tool", 448 "type": "tool",
449 "uuid": "b525a58a-dd2d-48c4-ac0e-516184a53ced", 449 "uuid": "b525a58a-dd2d-48c4-ac0e-516184a53ced",
450 "workflow_outputs": [ 450 "workflow_outputs": [
451 { 451 {
452 "label": null, 452 "label": null,
455 } 455 }
456 ] 456 ]
457 }, 457 },
458 "8": { 458 "8": {
459 "annotation": "", 459 "annotation": "",
460 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.07", 460 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.08",
461 "id": 8, 461 "id": 8,
462 "input_connections": { 462 "input_connections": {
463 "db_opts|histdb": { 463 "db_opts|histdb": {
464 "id": 1, 464 "id": 1,
465 "output_name": "output" 465 "output_name": "output"
482 "left": 1579.5625, 482 "left": 1579.5625,
483 "top": 887.59375 483 "top": 887.59375
484 }, 484 },
485 "post_job_actions": {}, 485 "post_job_actions": {},
486 "tool_errors": null, 486 "tool_errors": null,
487 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.07", 487 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.08",
488 "tool_shed_repository": { 488 "tool_shed_repository": {
489 "changeset_revision": "7f3c448e119b", 489 "changeset_revision": "3034ce97dd33",
490 "name": "ncbi_blast_plus", 490 "name": "ncbi_blast_plus",
491 "owner": "devteam", 491 "owner": "devteam",
492 "tool_shed": "toolshed.g2.bx.psu.edu" 492 "tool_shed": "toolshed.g2.bx.psu.edu"
493 }, 493 },
494 "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"__page__\": 0, \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"blast_type\": \"\\\"blastn\\\"\", \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"query\": \"null\"}", 494 "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"__page__\": 0, \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"blast_type\": \"\\\"blastn\\\"\", \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"query\": \"null\"}",
495 "tool_version": "0.1.07", 495 "tool_version": "0.1.08",
496 "type": "tool", 496 "type": "tool",
497 "uuid": "da354a9b-03b3-4aa9-b409-0689f6a3e15b", 497 "uuid": "da354a9b-03b3-4aa9-b409-0689f6a3e15b",
498 "workflow_outputs": [ 498 "workflow_outputs": [
499 { 499 {
500 "label": null, 500 "label": null,