Mercurial > repos > drosofff > metavisitor_workflows

comparison Galaxy-Workflow-Metavisitor__Workflow_for_remapping_in_Use_Cases_2-1,2.ga @ 3:ba15c770fd40 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
author drosofff
date Thu, 17 Nov 2016 07:27:04 -0500
parents 48b020a0d2f7
children
comparison
equal deleted inserted replaced
2:48b020a0d2f7 3:ba15c770fd40
170 "uuid": "c1d6a090-fc9b-4957-a952-4241216e082a", 170 "uuid": "c1d6a090-fc9b-4957-a952-4241216e082a",
171 "workflow_outputs": [] 171 "workflow_outputs": []
172 }, 172 },
173 "4": { 173 "4": {
174 "annotation": "", 174 "annotation": "",
175 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2", 175 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2.1",
176 "id": 4, 176 "id": 4,
177 "input_connections": { 177 "input_connections": {
178 "input": { 178 "input": {
179 "id": 3, 179 "id": 3,
180 "output_name": "out_file1" 180 "output_name": "out_file1"
221 "action_type": "HideDatasetAction", 221 "action_type": "HideDatasetAction",
222 "output_name": "unaligned" 222 "output_name": "unaligned"
223 } 223 }
224 }, 224 },
225 "tool_errors": null, 225 "tool_errors": null,
226 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2", 226 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2.1",
227 "tool_shed_repository": { 227 "tool_shed_repository": {
228 "changeset_revision": "c1bfa227bbb6", 228 "changeset_revision": "615d2550977f",
229 "name": "msp_sr_bowtie", 229 "name": "msp_sr_bowtie",
230 "owner": "drosofff", 230 "owner": "drosofff",
231 "tool_shed": "toolshed.g2.bx.psu.edu" 231 "tool_shed": "toolshed.g2.bx.psu.edu"
232 }, 232 },
233 "tool_state": "{\"__page__\": 0, \"output_format\": \"\\\"tabular\\\"\", \"additional_fasta\": \"\\\"No\\\"\", \"v_mismatches\": \"\\\"0\\\"\", \"__rerun_remap_job_id__\": null, \"input\": \"null\", \"refGenomeSource\": \"{\\\"genomeSource\\\": \\\"history\\\", \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\", \"method\": \"\\\"multiple\\\"\"}", 233 "tool_state": "{\"__page__\": 0, \"output_format\": \"\\\"tabular\\\"\", \"additional_fasta\": \"\\\"No\\\"\", \"v_mismatches\": \"\\\"0\\\"\", \"__rerun_remap_job_id__\": null, \"input\": \"null\", \"refGenomeSource\": \"{\\\"genomeSource\\\": \\\"history\\\", \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\", \"method\": \"\\\"multiple\\\"\"}",
234 "tool_version": "1.1.2", 234 "tool_version": "1.1.2.1",
235 "type": "tool", 235 "type": "tool",
236 "uuid": "7c3b7910-0490-4b69-ad32-c4ab81d01046", 236 "uuid": "7c3b7910-0490-4b69-ad32-c4ab81d01046",
237 "workflow_outputs": [] 237 "workflow_outputs": []
238 }, 238 },
239 "5": { 239 "5": {
282 } 282 }
283 ] 283 ]
284 }, 284 },
285 "6": { 285 "6": {
286 "annotation": "", 286 "annotation": "",
287 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.1.5", 287 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.2.0",
288 "id": 6, 288 "id": 6,
289 "input_connections": { 289 "input_connections": {
290 "refGenomeSource|ownFile": { 290 "refGenomeSource|ownFile": {
291 "id": 1, 291 "id": 1,
292 "output_name": "output" 292 "output_name": "output"
336 "action_type": "HideDatasetAction", 336 "action_type": "HideDatasetAction",
337 "output_name": "size_distribution_dataframe" 337 "output_name": "size_distribution_dataframe"
338 } 338 }
339 }, 339 },
340 "tool_errors": null, 340 "tool_errors": null,
341 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.1.5", 341 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.2.0",
342 "tool_shed_repository": { 342 "tool_shed_repository": {
343 "changeset_revision": "68f58363f1c6", 343 "changeset_revision": "92898cc3ea19",
344 "name": "msp_sr_readmap_and_size_histograms", 344 "name": "msp_sr_readmap_and_size_histograms",
345 "owner": "drosofff", 345 "owner": "drosofff",
346 "tool_shed": "toolshed.g2.bx.psu.edu" 346 "tool_shed": "toolshed.g2.bx.psu.edu"
347 }, 347 },
348 "tool_state": "{\"minquery\": \"\\\"18\\\"\", \"__page__\": 0, \"rows_per_page\": \"\\\"8\\\"\", \"yrange\": \"\\\"0\\\"\", \"title\": \"\\\"Readmaps and size distributions\\\"\", \"refGenomeSource\": \"{\\\"genomeSource\\\": \\\"history\\\", \\\"series\\\": [{\\\"__index__\\\": 0, \\\"norm\\\": \\\"1.0\\\", \\\"input\\\": null}], \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\", \"__rerun_remap_job_id__\": null, \"maxquery\": \"\\\"30\\\"\", \"xlabel\": \"\\\"Coordinates/read size\\\"\", \"ylabel\": \"\\\"Number of reads\\\"\", \"gff\": \"null\"}", 348 "tool_state": "{\"minquery\": \"\\\"18\\\"\", \"__page__\": 0, \"rows_per_page\": \"\\\"8\\\"\", \"yrange\": \"\\\"0\\\"\", \"title\": \"\\\"Readmaps and size distributions\\\"\", \"refGenomeSource\": \"{\\\"genomeSource\\\": \\\"history\\\", \\\"series\\\": [{\\\"__index__\\\": 0, \\\"norm\\\": \\\"1.0\\\", \\\"input\\\": null}], \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\", \"__rerun_remap_job_id__\": null, \"maxquery\": \"\\\"30\\\"\", \"xlabel\": \"\\\"Coordinates/read size\\\"\", \"ylabel\": \"\\\"Number of reads\\\"\", \"gff\": \"null\"}",
349 "tool_version": "1.1.5", 349 "tool_version": "1.2.0",
350 "type": "tool", 350 "type": "tool",
351 "uuid": "ebaf90ab-b8ea-428f-876c-8f9fabd1fbf9", 351 "uuid": "ebaf90ab-b8ea-428f-876c-8f9fabd1fbf9",
352 "workflow_outputs": [ 352 "workflow_outputs": [
353 { 353 {
354 "label": null, 354 "label": null,