Mercurial > repos > drosofff > msp_blastparser_and_hits

comparison BlastParser_and_hits.xml @ 6:78c34df2dd8d draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_blastparser_and_hits commit 3048cdbea989bc7d28326bf9479fc3010ff8b33c
author drosofff
date Tue, 02 Feb 2016 11:38:51 -0500
parents 60b6bd959929
children ccffd39695ae
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5:a0dec1a0f2ef 6:78c34df2dd8d
1 <tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.3.3"> 1 <tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.4.0">
2 <description>for virus discovery</description> 2 <description>for virus discovery</description>
3 <requirements></requirements> 3 <requirements></requirements>
4 <command interpreter="python"> 4 <command interpreter="python">
5 BlastParser_and_hits.py 5 BlastParser_and_hits.py
6 --sequences $sequences 6 --sequences $sequences
17 --filter_term_in "$additional_filters.filter_term_in" 17 --filter_term_in "$additional_filters.filter_term_in"
18 --filter_term_out "$additional_filters.filter_term_out" 18 --filter_term_out "$additional_filters.filter_term_out"
19 #end if 19 #end if
20 --al_sequences $al_sequences 20 --al_sequences $al_sequences
21 --un_sequences $un_sequences 21 --un_sequences $un_sequences
22 --dataset_name $blast.name
22 23
23 </command> 24 </command>
24 <inputs> 25 <inputs>
25 <param name="sequences" type="data" format="fasta" label="fasta sequences that have been blasted" /> 26 <param name="sequences" type="data" format="fasta" label="fasta sequences that have been blasted" />
26 <param name="blast" type="data" format="tabular" label="The blast output you wish to parse" /> 27 <param name="blast" type="data" format="tabular" label="The blast output you wish to parse" />