Mercurial > repos > drosofff > msp_blastparser_and_hits
diff BlastParser_and_hits.xml @ 4:60b6bd959929 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_blastparser_and_hits commit e842488e979d8a00b9646061573355cb427bc89c
| author | drosofff |
|---|---|
| date | Fri, 15 Jan 2016 12:29:30 -0500 |
| parents | 8f5d48294f70 |
| children | 78c34df2dd8d |
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--- a/BlastParser_and_hits.xml Mon Oct 19 12:13:12 2015 -0400 +++ b/BlastParser_and_hits.xml Fri Jan 15 12:29:30 2016 -0500 @@ -1,4 +1,4 @@ -<tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.3.2"> +<tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.3.3"> <description>for virus discovery</description> <requirements></requirements> <command interpreter="python"> @@ -14,6 +14,8 @@ --filter_relativeCov $additional_filters.filter_relativeCov --filter_maxScore $additional_filters.filter_maxScore --filter_meanScore $additional_filters.filter_meanScore + --filter_term_in "$additional_filters.filter_term_in" + --filter_term_out "$additional_filters.filter_term_out" #end if --al_sequences $al_sequences --un_sequences $un_sequences @@ -38,6 +40,8 @@ <param name="filter_relativeCov" type="float" value="0" max="1" label="Minimum Relative Subject Coverage" help=""/> <param name="filter_maxScore" type="float" value="0" label="Minimum maximum BitScore" help=""/> <param name="filter_meanScore" type="float" value="0" label="Minimum mean BitScore" help=""/> + <param name="filter_term_in" type="text" value="" label="filter the subject list with a keyword" help=""/> + <param name="filter_term_out" type="text" value="" label="filter the subject list excluding a keyword" help=""/> </when> </conditional> </inputs>