Mercurial > repos > drosofff > msp_blastparser_and_hits
diff BlastParser_and_hits.xml @ 11:77346ecf5a28 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_blastparser_and_hits commit e979a94ca761f94e6617b3e761bde5775846d2d8
| author | drosofff |
|---|---|
| date | Fri, 05 Feb 2016 09:40:00 -0500 |
| parents | ddebfe3fb11a |
| children | 80e4273db58d |
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--- a/BlastParser_and_hits.xml Fri Feb 05 05:45:52 2016 -0500 +++ b/BlastParser_and_hits.xml Fri Feb 05 09:40:00 2016 -0500 @@ -1,24 +1,24 @@ -<tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.4.2"> +<tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.4.3"> <description>for virus discovery</description> <requirements></requirements> <command interpreter="python"> BlastParser_and_hits.py - --sequences "$sequences" - --blast "$blast" - --tabularOutput "$tabularOutput" - --fastaOutput "$fastaOutput" - --flanking "$flanking" - --mode "$mode" + --sequences $sequences + --blast $blast + --tabularOutput $tabularOutput + --fastaOutput $fastaOutput + --flanking $flanking + --mode $mode ## Additional parameters. #if $additional_filters.use_filters == "yes": - --filter_relativeCov "$additional_filters.filter_relativeCov" - --filter_maxScore "$additional_filters.filter_maxScore" - --filter_meanScore "$additional_filters.filter_meanScore" + --filter_relativeCov $additional_filters.filter_relativeCov + --filter_maxScore $additional_filters.filter_maxScore + --filter_meanScore $additional_filters.filter_meanScore --filter_term_in "$additional_filters.filter_term_in" --filter_term_out "$additional_filters.filter_term_out" #end if - --al_sequences "$al_sequences" - --un_sequences "$un_sequences" + --al_sequences $al_sequences + --un_sequences $un_sequences --dataset_name "$blast.element_identifier" </command>