# HG changeset patch
# User drosofff
# Date 1454683200 18000
# Node ID 77346ecf5a28adea3dde25b3205b41e90a85d8c9
# Parent  ddebfe3fb11aa5e80bfd15d993c214e183802acc
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_blastparser_and_hits commit e979a94ca761f94e6617b3e761bde5775846d2d8

diff -r ddebfe3fb11a -r 77346ecf5a28 BlastParser_and_hits.xml
--- a/BlastParser_and_hits.xml	Fri Feb 05 05:45:52 2016 -0500
+++ b/BlastParser_and_hits.xml	Fri Feb 05 09:40:00 2016 -0500
@@ -1,24 +1,24 @@
-<tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.4.2">
+<tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.4.3">
 <description>for virus discovery</description>
 <requirements></requirements>
 <command interpreter="python">
 BlastParser_and_hits.py
-	--sequences "$sequences"
-	--blast "$blast"
-	--tabularOutput "$tabularOutput"
-	--fastaOutput "$fastaOutput"
-	--flanking "$flanking"
-	--mode "$mode"
+	--sequences $sequences
+	--blast $blast
+	--tabularOutput $tabularOutput
+	--fastaOutput $fastaOutput
+	--flanking $flanking
+	--mode $mode
 	## Additional parameters.
     #if $additional_filters.use_filters == "yes":
-        --filter_relativeCov "$additional_filters.filter_relativeCov"
-        --filter_maxScore "$additional_filters.filter_maxScore"
-        --filter_meanScore "$additional_filters.filter_meanScore"
+        --filter_relativeCov $additional_filters.filter_relativeCov
+        --filter_maxScore $additional_filters.filter_maxScore
+        --filter_meanScore $additional_filters.filter_meanScore
         --filter_term_in "$additional_filters.filter_term_in"
         --filter_term_out "$additional_filters.filter_term_out"
     #end if
-    --al_sequences "$al_sequences"
-    --un_sequences "$un_sequences"
+    --al_sequences $al_sequences
+    --un_sequences $un_sequences
     --dataset_name "$blast.element_identifier"
 
 </command>