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comparison test-data/cap3stdout.txt @ 0:e2ae46b16b3b draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Sun, 21 Jun 2015 14:30:20 -0400
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comparison
equal deleted inserted replaced
-1:000000000000 0:e2ae46b16b3b
1 Number of segment pairs = 342; number of pairwise comparisons = 14
2 '+' means given segment; '-' means reverse complement
3
4 Overlaps Containments No. of Constraints Supporting Overlap
5
6 ******************* Contig 1 ********************
7 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
8 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
9 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
10 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
11 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
12 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
13 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
14 ******************* Contig 2 ********************
15 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
16 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
17 ******************* Contig 3 ********************
18 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
19 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
20 ******************* Contig 4 ********************
21 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
22 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
23
24 DETAILED DISPLAY OF CONTIGS
25 ******************* Contig 1 ********************
26 . : . : . : . : . : . :
27 gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG
28 gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG
29 gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG
30 ____________________________________________________________
31 consensus GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG
32
33 . : . : . : . : . : . :
34 gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG
35 gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG
36 gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG
37 ____________________________________________________________
38 consensus GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG
39
40 . : . : . : . : . : . :
41 gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG
42 gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG
43 gi|225356593|gb|FJ15+ ACATCCTGG
44 gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG
45 ____________________________________________________________
46 consensus TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG
47
48 . : . : . : . : . : . :
49 gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC
50 gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGC
51 gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC
52 gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC
53 ____________________________________________________________
54 consensus GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC
55
56 . : . : . : . : . : . :
57 gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC
58 gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC
59 gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC
60 ____________________________________________________________
61 consensus TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC
62
63 . : . : . : . : . : . :
64 gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA
65 gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA
66 gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA
67 gi|225356593|gb|FJ15+ TACTCCTGCA
68 ____________________________________________________________
69 consensus ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA
70
71 . : . : . : . : . : . :
72 gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTAC
73 gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTAC
74 gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT
75 gi|225356593|gb|FJ15+ TTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT
76 gi|225356593|gb|FJ15+ ACGTCCAGATTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT
77 ____________________________________________________________
78 consensus ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT
79
80 . : . : . : . : . : . :
81 gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG
82 gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG
83 gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG
84 ____________________________________________________________
85 consensus CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG
86
87 . : . : . : . : . : . :
88 gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA
89 gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA
90 gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA
91 ____________________________________________________________
92 consensus TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA
93
94 . : . : . : . : . : . :
95 gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT
96 gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT
97 gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT
98 ____________________________________________________________
99 consensus TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT
100
101 . : . : . : . : . : . :
102 gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA
103 gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA
104 gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA
105 ____________________________________________________________
106 consensus CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA
107
108 . : . : . : . : . : . :
109 gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC
110 gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC
111 gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC
112 ____________________________________________________________
113 consensus ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC
114
115 . : . : . : . : . : . :
116 gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC
117 gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGT
118 gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGT
119 gi|225356593|gb|FJ15+ GTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC
120 ____________________________________________________________
121 consensus CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC
122
123 . : . : . : . : . : . :
124 gi|225356593|gb|FJ15+ TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC
125 gi|225356593|gb|FJ15+ TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC
126 ____________________________________________________________
127 consensus TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC
128
129 . : . : . : . : . : . :
130 gi|225356593|gb|FJ15+ TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC
131 gi|225356593|gb|FJ15+ TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC
132 ____________________________________________________________
133 consensus TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC
134
135 . : . : . : . : . : . :
136 gi|225356593|gb|FJ15+ TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC
137 gi|225356593|gb|FJ15+ TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC
138 ____________________________________________________________
139 consensus TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC
140
141 . : . : . : . : . : . :
142 gi|225356593|gb|FJ15+ GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT
143 gi|225356593|gb|FJ15+ GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT
144 ____________________________________________________________
145 consensus GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT
146
147 . : . : . : . : . : . :
148 gi|225356593|gb|FJ15+ GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC
149 gi|225356593|gb|FJ15+ GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC
150 ____________________________________________________________
151 consensus GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC
152
153 . : . : . : . : . : . :
154 gi|225356593|gb|FJ15+ TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC
155 gi|225356593|gb|FJ15+ TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC
156 ____________________________________________________________
157 consensus TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC
158
159 . : . : . : . : . : . :
160 gi|225356593|gb|FJ15+ TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC
161 gi|225356593|gb|FJ15+ TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC
162 ____________________________________________________________
163 consensus TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC
164
165 . : . : . : . : . : . :
166 gi|225356593|gb|FJ15+ AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG
167 gi|225356593|gb|FJ15+ AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG
168 ____________________________________________________________
169 consensus AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG
170
171 . : . : . : . : . : . :
172 gi|225356593|gb|FJ15+ AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG
173 gi|225356593|gb|FJ15+ AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG
174 ____________________________________________________________
175 consensus AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG
176
177 . : . : . : . : . : . :
178 gi|225356593|gb|FJ15+ TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC
179 gi|225356593|gb|FJ15+ TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC
180 ____________________________________________________________
181 consensus TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC
182
183 ******************* Contig 2 ********************
184 . : . : . : . : . : . :
185 gi|225356593|gb|FJ15+ TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC
186 gi|225356593|gb|FJ15+ TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC
187 ____________________________________________________________
188 consensus TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC
189
190 . : . : . : . : . : . :
191 gi|225356593|gb|FJ15+ AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA
192 gi|225356593|gb|FJ15+ AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA
193 ____________________________________________________________
194 consensus AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA
195
196 . : . : . : . : . : . :
197 gi|225356593|gb|FJ15+ GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA
198 gi|225356593|gb|FJ15+ GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA
199 ____________________________________________________________
200 consensus GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA
201
202 . : . : . : . : . : . :
203 gi|225356593|gb|FJ15+ GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA
204 gi|225356593|gb|FJ15+ GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA
205 ____________________________________________________________
206 consensus GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA
207
208 . : . : . : . : . : . :
209 gi|225356593|gb|FJ15+ GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC
210 gi|225356593|gb|FJ15+ GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC
211 ____________________________________________________________
212 consensus GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC
213
214 . : . : . : . : . : . :
215 gi|225356593|gb|FJ15+ CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC
216 gi|225356593|gb|FJ15+ CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC
217 ____________________________________________________________
218 consensus CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC
219
220 . : . : . : . : . : . :
221 gi|225356593|gb|FJ15+ TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT
222 gi|225356593|gb|FJ15+ TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT
223 ____________________________________________________________
224 consensus TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT
225
226 . : . : . : . : . : . :
227 gi|225356593|gb|FJ15+ GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG
228 gi|225356593|gb|FJ15+ GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG
229 ____________________________________________________________
230 consensus GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG
231
232 . : . : . : . : . : . :
233 gi|225356593|gb|FJ15+ GATGAAGAGACAAGGCTTGGTTGTCAAAGAGGGAA
234 gi|225356593|gb|FJ15+ GATGAAGAGACAAGGCTTAGTTGTCA
235 ____________________________________________________________
236 consensus GATGAAGAGACAAGGCTTAGTTGTCAAAGAGGGAA
237
238 ******************* Contig 3 ********************
239 . : . : . : . : . : . :
240 gi|225356593|gb|FJ15+ AACGTAAAACAAACGACATGGATGCATCTAACCCTATTATTTCAAGCGATAGAAGCACTG
241 gi|225356593|gb|FJ15+ ATAGAAGCACTG
242 ____________________________________________________________
243 consensus AACGTAAAACAAACGACATGGATGCATCTAACCCTATTATTTCAAGCGATAGAAGCACTG
244
245 . : . : . : . : . : . :
246 gi|225356593|gb|FJ15+ TGAATCAGGTTTATGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG
247 gi|225356593|gb|FJ15+ TGAATCAGGTTTACGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG
248 ____________________________________________________________
249 consensus TGAATCAGGTTTACGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG
250
251 . : . : . : . : . : . :
252 gi|225356593|gb|FJ15+ AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG
253 gi|225356593|gb|FJ15+ AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG
254 ____________________________________________________________
255 consensus AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG
256
257 . : . : . : . : . : . :
258 gi|225356593|gb|FJ15+ AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG
259 gi|225356593|gb|FJ15+ AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG
260 ____________________________________________________________
261 consensus AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG
262
263 . : . : . : . : . : . :
264 gi|225356593|gb|FJ15+ TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT
265 gi|225356593|gb|FJ15+ TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT
266 ____________________________________________________________
267 consensus TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT
268
269 ******************* Contig 4 ********************
270 . : . : . : . : . : . :
271 gi|225356593|gb|FJ15+ TACGGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA
272 gi|225356593|gb|FJ15+ GGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA
273 ____________________________________________________________
274 consensus TACGGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA
275
276 . : . : . : . : . : . :
277 gi|225356593|gb|FJ15+ CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA
278 gi|225356593|gb|FJ15+ CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA
279 ____________________________________________________________
280 consensus CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA
281
282 . : . : . : . : . : . :
283 gi|225356593|gb|FJ15+ ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC
284 gi|225356593|gb|FJ15+ ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC
285 ____________________________________________________________
286 consensus ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC
287
288 . : . : . : . : . : . :
289 gi|225356593|gb|FJ15+ GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA
290 gi|225356593|gb|FJ15+ GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA
291 ____________________________________________________________
292 consensus GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA
293
294 . : . : . : . : . : . :
295 gi|225356593|gb|FJ15+ ACAGTTCTTGTTA
296 gi|225356593|gb|FJ15+ ACAGTTCTTGTTA
297 ____________________________________________________________
298 consensus ACAGTTCTTGTTA
299