Mercurial > repos > drosofff > msp_fasta_tabular_converter

comparison fasta_tabular_converter.xml @ 1:2f7278120be9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_fasta_tabular_converter commit 6a93f2809e2939f9d847c3238bfbff8ead367d9f
author drosofff
date Tue, 22 Mar 2016 18:54:00 -0400
parents 951cb6b3979b
children 36388b666bfc
comparison
equal deleted inserted replaced
0:951cb6b3979b 1:2f7278120be9
1 <tool id="fasta_tabular_converter" name="fasta - tabular" version="1.0.2"> 1 <tool id="fasta_tabular_converter" name="fasta - tabular" version="1.1.0">
2 <description>conversions</description> 2 <description>conversions</description>
3 <command interpreter="python">fasta_tabular_converter.py $input $output $switch.conversionType</command> 3 <command interpreter="python">fasta_tabular_converter.py
4 --input $input
5 --output $output
6 --type $switch.conversionType
7 </command>
4 <inputs> 8 <inputs>
5 <conditional name="switch"> 9 <conditional name="switch">
6 <param name="conversionType" type="select" label="conversion option"> 10 <param name="conversionType" type="select" label="conversion option">
7 <option value="fasta2tabular" selected="true">fasta to tabular</option> 11 <option value="fasta2tabular" selected="true">fasta to tabular</option>
8 <option value="tabular2fasta">tabular to fasta</option> 12 <option value="tabular2fasta">tabular to fasta</option>
9 <option value="tabular2fastaweight">tabular to weighted fasta</option> 13 <option value="tabular2fastaweight">tabular to weighted fasta</option>
10 <option value="fastaweight2fastaweight">recompile weighted fasta to catenated fasta weighted</option> 14 <option value="fastaweight2fastaweight">recompile weighted fasta to catenated fasta weighted</option>
11 <option value="fastaweight2fasta">fasta weighted to fasta</option> 15 <option value="fastaweight2fasta">fasta weighted to fasta</option>
12 </param> 16 </param>
13 <when value="fasta2tabular"> 17 <when value="fasta2tabular">
14 <param name="input" type="data" format="fasta" label="fasta file to convert to tabular"/> 18 <param name="input" type="data" format="fasta" label="fasta file to convert to tabular"/>
15 </when> 19 </when>
16 <when value="tabular2fasta"> 20 <when value="tabular2fasta">
17 <param name="input" type="data" format="tabular" label="tabular file to convert to fasta"/> 21 <param name="input" type="data" format="tabular" label="tabular file to convert to fasta"/>
18 </when> 22 </when>
19 <when value="tabular2fastaweight"> 23 <when value="tabular2fastaweight">
20 <param name="input" type="data" format="tabular" label="tabular file to convert to fasta weighted"/> 24 <param name="input" type="data" format="tabular" label="tabular file to convert to fasta weighted"/>
21 </when> 25 </when>
22 <when value="fastaweight2fastaweight"> 26 <when value="fastaweight2fastaweight">
23 <param name="input" type="data" format="fasta" label="catenated fasta weighted to recompile" help="Use this option only if you known what you're doing"/> 27 <param name="input" type="data" format="fasta" label="catenated fasta weighted to recompile" help="Use this option only if you known what you're doing"/>
24 </when> 28 </when>
25 <when value="fastaweight2fasta"> 29 <when value="fastaweight2fasta">
26 <param name="input" type="data" format="fasta" label="fasta weighted file to convert to fasta"/> 30 <param name="input" type="data" format="fasta" label="fasta weighted file to convert to fasta"/>
27 </when> 31 </when>
28 </conditional> 32 </conditional>
29
30 </inputs> 33 </inputs>
31 34
32 <outputs> 35 <outputs>
33 <data format="fasta" name="output" label="${switch.conversionType} conversion"> 36 <data format="fasta" name="output" label="${switch.conversionType} conversion">
34 <change_format> 37 <change_format>