Mercurial > repos > drosofff > msp_fasta_tabular_converter

diff fasta_tabular_converter.xml @ 3:36388b666bfc draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_fasta_tabular_converter commit b6de14061c479f0418cd89e26d6f5ac26e565a07
author drosofff
date Wed, 09 Nov 2016 11:24:13 -0500
parents 2f7278120be9
children
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--- a/fasta_tabular_converter.xml	Fri Mar 25 19:29:40 2016 -0400
+++ b/fasta_tabular_converter.xml	Wed Nov 09 11:24:13 2016 -0500
@@ -1,10 +1,11 @@
 <tool id="fasta_tabular_converter" name="fasta - tabular" version="1.1.0">
   <description>conversions</description>
-  <command interpreter="python">fasta_tabular_converter.py
-                                          --input $input
-                                          --output $output
-                                          --type $switch.conversionType
-  </command>
+  <command><![CDATA[
+      python '$__tool_directory__'/fasta_tabular_converter.py
+      --input '$input'
+      --output '$output'
+      --type $switch.conversionType
+  ]]></command>
   <inputs>
     <conditional name="switch">
        <param name="conversionType" type="select" label="conversion option">