Mercurial > repos > drosofff > msp_oases

comparison oases_optimiser.xml @ 5:68ed36eed6c5 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_oases commit a5df655e2dae7ee5863305847b923716b2cdf661
author drosofff
date Sun, 16 Apr 2017 18:01:04 -0400
parents dc684e37f668
children
comparison
equal deleted inserted replaced
4:dc684e37f668 5:68ed36eed6c5
1 <tool id="oasesoptimiserv" name="Oases_optimiser" version="1.1.5"> 1 <tool id="oasesoptimiserv" name="Oases_optimiser" version="1.2.1">
2 <description>Auto optimise de novo RNA-seq Oases/Velvet assembly</description> 2 <description>Auto optimise de novo RNA-seq Oases/Velvet assembly</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123">oases</requirement> 4 <requirement type="package" version="0.2.09">oases</requirement>
5 <requirement type="package" version="1.2.10">velvet</requirement>
5 </requirements> 6 </requirements>
6 <command><![CDATA[ 7 <command><![CDATA[
7 python "$__tool_directory__"/oases_optimiser.py "$start_hash_length" "$end_hash_length" 8 python "$__tool_directory__"/oases_optimiser.py "$start_hash_length" "$end_hash_length"
8 #for $i in $inputs 9 #for $i in $inputs
9 "${i.input}" 10 "${i.input}"
47 <tests> 48 <tests>
48 <test> 49 <test>
49 <param name="input" value="input.fa" ftype="fasta"/> 50 <param name="input" value="input.fa" ftype="fasta"/>
50 <param name="start_hash_length" value="15" /> 51 <param name="start_hash_length" value="15" />
51 <param name="end_hash_length" value="35" /> 52 <param name="end_hash_length" value="35" />
52 <output name="transcripts" file="output.fa"/> 53 <output name="transcripts">
54 <assert_contents>
55 <has_line_matching expression=">Locus_1_Transcript_1/1_Confidence_.+" />
56 <has_line_matching expression=">Locus_25_Transcript_1/1_Confidence_.+" />
57 </assert_contents>
58 </output>
53 </test> 59 </test>
54 </tests> 60 </tests>
55 <help> 61 <help>
56 **Oases Optimiser Overview** 62 **Oases Optimiser Overview**
57 63