Mercurial > repos > drosofff > msp_oases

diff oases_optimiser.xml @ 5:68ed36eed6c5 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_oases commit a5df655e2dae7ee5863305847b923716b2cdf661
author drosofff
date Sun, 16 Apr 2017 18:01:04 -0400
parents dc684e37f668
children
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--- a/oases_optimiser.xml	Thu May 12 10:45:03 2016 -0400
+++ b/oases_optimiser.xml	Sun Apr 16 18:01:04 2017 -0400
@@ -1,7 +1,8 @@
-<tool id="oasesoptimiserv" name="Oases_optimiser" version="1.1.5">
+<tool id="oasesoptimiserv" name="Oases_optimiser" version="1.2.1">
     <description>Auto optimise de novo RNA-seq Oases/Velvet assembly</description>
     <requirements>
-        <requirement type="package" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123">oases</requirement>
+        <requirement type="package" version="0.2.09">oases</requirement>
+        <requirement type="package" version="1.2.10">velvet</requirement>
     </requirements>
     <command><![CDATA[
 	python "$__tool_directory__"/oases_optimiser.py  "$start_hash_length" "$end_hash_length"
@@ -49,7 +50,12 @@
             <param name="input" value="input.fa" ftype="fasta"/>
             <param name="start_hash_length" value="15" />
             <param name="end_hash_length" value="35" />
-            <output name="transcripts" file="output.fa"/>
+            <output name="transcripts">
+                <assert_contents>
+                    <has_line_matching expression=">Locus_1_Transcript_1/1_Confidence_.+" />
+                    <has_line_matching expression=">Locus_25_Transcript_1/1_Confidence_.+" />
+                </assert_contents>
+            </output>
         </test>
     </tests>
 	<help>