# HG changeset patch
# User drosofff
# Date 1513706811 18000
# Node ID 0760088254164be126a735e5819f1dc30d347c21
# Parent  791edb7b7ea1962007c477a83f2e4776dbd2d3f2
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit a91db0ffc9ffa13820088fc2756f00c741a01165

diff -r 791edb7b7ea1 -r 076008825416 readmap.xml
--- a/readmap.xml	Tue Dec 19 12:54:36 2017 -0500
+++ b/readmap.xml	Tue Dec 19 13:06:51 2017 -0500
@@ -1,4 +1,4 @@
-<tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.2.2">
+<tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.2.3">
     <description>from sRbowtie aligment</description>
     <requirements>
         <requirement type="package" version="1.2.0">bowtie</requirement>
@@ -45,7 +45,7 @@
             --gff
             $gff
         #end if
-        ; Rscript $__tool_directory__/plot_size_readmap.r
+        ; Rscript '$__tool_directory__'/plot_size_readmap.r
         --readmap_tab "$readmap_dataframe"
         --size_distribution_tab "$size_distribution_dataframe"
         --readmap_pdf "$readmap_PDF"