Mercurial > repos > drosofff > msp_sr_signature
diff signature.py @ 1:6218b518cd16 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_signature commit 062e78aef14c4655d1b32d5f29ca543a50389b08
| author | drosofff |
|---|---|
| date | Wed, 07 Jun 2017 17:53:44 -0400 |
| parents | a2f293717ce3 |
| children |
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--- a/signature.py Wed Oct 21 11:35:25 2015 -0400 +++ b/signature.py Wed Jun 07 17:53:44 2017 -0400 @@ -2,15 +2,13 @@ # script for computing overlap signatures from a bowtie output # Christophe Antoniewski <drosofff@gmail.com> # Usage signature.py <1:input> <2:format of input> <3:minsize query> <4:maxsize query> <5:minsize target> <6:maxsize target> -# <7:minscope> <8:maxscope> <9:output> <10:bowtie index> <11:procedure option> <12: graph (global or lattice)> -# <13: R code> +# <7:minscope> <8:maxscope> <9:output> <10:bowtie index> <11:procedure option> <12: graph (global or lattice)> +# <13: R code> # version 2.0.0 -import sys import subprocess import argparse -from smRtools import * -from collections import defaultdict # test whether it is required +from smRtools import HandleSmRNAwindows def Parser():