Mercurial > repos > drosofff > package_ged_oases

annotate tool_dependencies.xml @ 0:853ebf512cc7 draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Sun, 21 Jun 2015 14:34:59 -0400
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children 76e8c94ea259
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3">
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4 <repository changeset_revision="b3e2c0f12e11" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="oases" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123">
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7 <install version="1.0">
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8 <actions>
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9 <action type="shell_command">git clone git://github.com/dzerbino/oases.git</action>
853ebf512cc7 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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10 <action type="shell_command">git reset --hard 7a32460a60929b510037952ae815bb6e29b68123</action>
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11 <action type="shell_command">sed -i -e "32s/cleanobj//" Makefile</action>
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12 <action type="shell_command">sed -i -e "32s/doc//" Makefile</action>
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13 <action type="set_environment_for_install">
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14 <repository changeset_revision="b3e2c0f12e11" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
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15 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3" />
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16 </repository>
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17 </action>
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18 <action type="shell_command">VELVETPATH=`echo $PATH | awk -F: '{print $1}'`; make VELVET_DIR=$VELVETPATH MAXKMERLENGTH=70</action>
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19 <action type="move_directory_files">
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20 <source_directory>.</source_directory>
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21 <destination_directory>$INSTALL_DIR</destination_directory>
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22 </action>
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23 <!-- <action type="move_file">
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24 <source>oases</source>
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25 <destination>$INSTALL_DIR</destination>
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26 </action> -->
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27 <action type="set_environment">
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28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
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29 </action>
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30 </actions>
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31 </install>
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32 </package>
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33 </tool_dependency>