Mercurial > repos > drosofff > package_ged_oases

comparison tool_dependencies.xml @ 1:76e8c94ea259 draft default tip

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Mon, 22 Jun 2015 10:38:03 -0400
parents 853ebf512cc7
children
comparison
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0:853ebf512cc7 1:76e8c94ea259
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3"> 3 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3">
4 <repository changeset_revision="b3e2c0f12e11" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="517ddcce2fa4" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="oases" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123"> 6 <package name="oases" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="shell_command">git clone git://github.com/dzerbino/oases.git</action> 9 <action type="shell_command">git clone git://github.com/dzerbino/oases.git</action>
10 <action type="shell_command">git reset --hard 7a32460a60929b510037952ae815bb6e29b68123</action> 10 <action type="shell_command">git reset --hard 7a32460a60929b510037952ae815bb6e29b68123</action>
11 <action type="shell_command">sed -i -e "32s/cleanobj//" Makefile</action> 11 <action type="shell_command">sed -i -e "32s/cleanobj//" Makefile</action>
12 <action type="shell_command">sed -i -e "32s/doc//" Makefile</action> 12 <action type="shell_command">sed -i -e "32s/doc//" Makefile</action>
13 <action type="set_environment_for_install"> 13 <action type="set_environment_for_install">
14 <repository changeset_revision="b3e2c0f12e11" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> 14 <repository changeset_revision="517ddcce2fa4" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
15 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3" /> 15 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3" />
16 </repository> 16 </repository>
17 </action> 17 </action>
18 <action type="shell_command">VELVETPATH=`echo $PATH | awk -F: '{print $1}'`; make VELVET_DIR=$VELVETPATH MAXKMERLENGTH=70</action> 18 <action type="shell_command">make VELVET_DIR=$VELVET_DIR MAXKMERLENGTH=70</action>
19 <action type="move_directory_files"> 19 <action type="move_directory_files">
20 <source_directory>.</source_directory> 20 <source_directory>.</source_directory>
21 <destination_directory>$INSTALL_DIR</destination_directory> 21 <destination_directory>$INSTALL_DIR</destination_directory>
22 </action> 22 </action>
23 <!-- <action type="move_file">
24 <source>oases</source>
25 <destination>$INSTALL_DIR</destination>
26 </action> -->
27 <action type="set_environment"> 23 <action type="set_environment">
28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> 24 <environment_variable action="prepend_to" name="PATH">$ENV[VELVET_DIR]:$INSTALL_DIR</environment_variable>
29 </action> 25 </action>
30 </actions> 26 </actions>
31 </install> 27 </install>
32 </package> 28 </package>
33 </tool_dependency> 29 </tool_dependency>