Mercurial > repos > drosofff > package_ged_velvet

annotate tool_dependencies.xml @ 0:b3e2c0f12e11 draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Sun, 21 Jun 2015 14:34:35 -0400
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children 517ddcce2fa4
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3">
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4 <install version="1.0">
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5 <actions>
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6 <action type="shell_command">git clone git://github.com/dzerbino/velvet.git</action>
b3e2c0f12e11 planemo upload for repository https://bitbucket.org/drosofff/gedtools/
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7 <action type="shell_command">git reset --hard 9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3</action>
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8 <action type="shell_command">sed -i -e "95s/cleanobj//" Makefile</action>
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9 <action type="shell_command">make 'MAXKMERLENGTH=70'</action>
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10 <action type="move_directory_files">
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11 <source_directory>.</source_directory>
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12 <destination_directory>$INSTALL_DIR</destination_directory>
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13 </action>
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14 <!-- <action type="move_file">
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15 <source>velvetg</source>
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16 <destination>$INSTALL_DIR</destination>
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17 </action>
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18 <action type="move_file">
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19 <source>velveth</source>
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20 <destination>$INSTALL_DIR</destination>
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21 </action> -->
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22 <action type="set_environment">
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23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
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24 </action>
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25 </actions>
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26 </install>
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27 <readme>
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28 </readme>
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29 </package>
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30 </tool_dependency>