Mercurial > repos > drosofff > package_ged_velvet

comparison tool_dependencies.xml @ 0:b3e2c0f12e11 draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Sun, 21 Jun 2015 14:34:35 -0400
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children 517ddcce2fa4
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-1:000000000000 0:b3e2c0f12e11
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3">
4 <install version="1.0">
5 <actions>
6 <action type="shell_command">git clone git://github.com/dzerbino/velvet.git</action>
7 <action type="shell_command">git reset --hard 9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3</action>
8 <action type="shell_command">sed -i -e "95s/cleanobj//" Makefile</action>
9 <action type="shell_command">make 'MAXKMERLENGTH=70'</action>
10 <action type="move_directory_files">
11 <source_directory>.</source_directory>
12 <destination_directory>$INSTALL_DIR</destination_directory>
13 </action>
14 <!-- <action type="move_file">
15 <source>velvetg</source>
16 <destination>$INSTALL_DIR</destination>
17 </action>
18 <action type="move_file">
19 <source>velveth</source>
20 <destination>$INSTALL_DIR</destination>
21 </action> -->
22 <action type="set_environment">
23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
24 </action>
25 </actions>
26 </install>
27 <readme>
28 </readme>
29 </package>
30 </tool_dependency>