Mercurial > repos > drosofff > repenrich

diff repenrich.xml @ 6:77807fc5d609 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/repenrich commit e9282183531bacbb4bbe2d6e53258f6e0ad0bc34
author drosofff
date Wed, 31 May 2017 13:09:15 -0400
parents ea5bba2c569f
children 6df84986c146
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--- a/repenrich.xml	Tue May 30 20:16:05 2017 -0400
+++ b/repenrich.xml	Wed May 31 13:09:15 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="repenrich" name="RepEnrich" version="1.2.0">
+<tool id="repenrich" name="RepEnrich" version="1.3.0">
     <description>Repeat Element Profiling</description>
     <requirements>
         <requirement type="package" version="1.2.0">bowtie</requirement>
@@ -86,7 +86,18 @@
             <output name="family_fraction_counts" file="Samp_family_fraction_counts.tabular" ftype="tabular"/>
             <output name="fraction_counts" file="Samp_fraction_counts.tabular" ftype="tabular"/>
         </test>
-   </tests>
+         <test>
+            <param name="seq_method_list" value="paired-end"/>
+            <param name="input_fastq" value="Samp_L.fastq" ftype="fastq"/>
+            <param name="input2_fastq" value="Samp_R.fastq" ftype="fastq"/>
+            <param name="genome" value="chrM.fa" ftype="fasta"/>
+            <param name="repeatmasker" value="chrM_repeatmasker.txt" ftype="txt"/>
+            <output name="bowtie_alignments" file="paired-aligned_reads.tab" ftype="tabular"/>
+            <output name="class_fraction_counts" file="Samp-paired_class_fraction_counts.tab" ftype="tabular"/>
+            <output name="family_fraction_counts" file="Samp-paired_family_fraction_counts.tab" ftype="tabular"/>
+            <output name="fraction_counts" file="Samp-paired_fraction_counts.tab" ftype="tabular"/>
+        </test>
+  </tests>
 
     <help>