Mercurial > repos > drosofff > yac_clipper

comparison yac.xml @ 1:8a8f62b4bf27 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Wed, 24 Jun 2015 17:06:30 -0400
parents 307cd074fa95
children 91cce7c1436d
comparison
equal deleted inserted replaced
0:307cd074fa95 1:8a8f62b4bf27
1 <tool id="yac" name="Clip adapter" version="1.3.3"> 1 <tool id="yac" name="Clip adapter" version="1.3.5">
2 <description /> 2 <description />
3 <command interpreter="python">yac.py --input $input 3 <command interpreter="python">yac.py --input $input
4 --output $output 4 --output $output
5 --output_format "$out_format" 5 --output_format "$out_format"
6 --adapter_to_clip $clip_source.clip_sequence 6 --adapter_to_clip $clip_source.clip_sequence
37 <param label="Enter your Sequence" name="clip_sequence" size="35" type="text" value="GAATCC" /> 37 <param label="Enter your Sequence" name="clip_sequence" size="35" type="text" value="GAATCC" />
38 </when> 38 </when>
39 </conditional> 39 </conditional>
40 </inputs> 40 </inputs>
41 <outputs> 41 <outputs>
42 <data format="fasta" metadata="input" name="output" /> 42 <data format="fasta" metadata_source="input" name="output">
43 <change_format> 43 <change_format>
44 <when format="fastq" input="out_format" value="fastq" /> 44 <when input="out_format" value="fastq" format="fastq" />
45 </change_format> 45 </change_format>
46 </data>
46 </outputs> 47 </outputs>
47 <tests> 48 <tests>
48 <test> 49 <test>
49 <param ftype="fastqsanger" name="input" value="yac.fastq" /> 50 <param ftype="fastqsanger" name="input" value="yac.fastq" />
50 <param name="min" value="18" /> 51 <param name="min" value="18" />