Mercurial > repos > drosofff > yac_clipper

comparison yac.xml @ 3:a18edcf9c7ed draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit b6de14061c479f0418cd89e26d6f5ac26e565a07
author drosofff
date Tue, 08 Nov 2016 12:25:10 -0500
parents 91cce7c1436d
children
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2:91cce7c1436d 3:a18edcf9c7ed
65 <param name="out_format" value="fastq" /> 65 <param name="out_format" value="fastq" />
66 <output file="yac_fastq.out" name="output" /> 66 <output file="yac_fastq.out" name="output" />
67 </test> 67 </test>
68 </tests> 68 </tests>
69 <help> 69 <help>
70 This tool clips adapter sequences from a fastq file and outputs either a 70 This tool clips adapter sequences from a fasta or fastq file and
71 fasta or fastq file of clipped reads with renumbered fasta/fastq headers. 71 outputs either a fasta or fastq file of clipped reads with
72 renumbered fasta/fastq headers.
72 73
73 By default clipped sequences with unknown nucleotides are kept, but 74 By default clipped sequences with unknown nucleotides are kept, but
74 can be discarded by setting "Accept reads containing N?" to reject. 75 can be discarded by setting "Accept reads containing N?" to reject.
75 76
76 Min size and max size filter clipped reads on their size. 77 Min size and max size filter clipped reads on their size.