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comparison apoc.xml @ 3:f7eb699686eb draft default tip

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/apoc/ commit a0d7ab86b86bb764e457767bf8e8bc29868d0cbb
author earlhaminst
date Mon, 10 Mar 2025 23:27:48 +0000
parents da07fb6a7c62
children
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2:da07fb6a7c62 3:f7eb699686eb
110 <outputs> 110 <outputs>
111 <data name="output_apoc" format="txt" /> 111 <data name="output_apoc" format="txt" />
112 </outputs> 112 </outputs>
113 <tests> 113 <tests>
114 <test> 114 <test>
115 <param name="template_source_select" value="pdbfile" /> 115 <conditional name="templates_source">
116 <param name="pdbfile1" value="apoc/1ha3A.pdb" ftype="pdb" /> 116 <param name="template_source_select" value="pdbfile" />
117 <param name="query_source_select" value="pdbfile" /> 117 <param name="pdbfile1" value="apoc/1ha3A.pdb" ftype="pdb" />
118 <param name="pdbfile2" value="apoc/3ec1A.pdb" ftype="pdb" /> 118 </conditional>
119 <output name="output_apoc"> 119 <conditional name="query_source">
120 <assert_contents> 120 <param name="query_source_select" value="pdbfile" />
121 <has_text_matching expression="PDB\s*files\s*loaded" /> 121 <param name="pdbfile2" value="apoc/3ec1A.pdb" ftype="pdb" />
122 </assert_contents> 122 </conditional>
123 </output> 123 <output name="output_apoc">
124 </test> 124 <assert_contents>
125 <test> 125 <has_text_matching expression="PDB\s*files\s*loaded" />
126 <param name="template_source_select" value="list" /> 126 </assert_contents>
127 <param name="lt" value="apoc/templ.lst" /> 127 </output>
128 <param name="template_0|input" value="apoc/1ha3A.pdb" ftype="pdb" /> 128 </test>
129 <param name="template_1|input" value="apoc/3ec1A.pdb" ftype="pdb" /> 129 <test>
130 <param name="template_2|input" value="apoc/1yr8A.pdb" ftype="pdb" /> 130 <conditional name="templates_source">
131 <param name="query_source_select" value="pdbfile" /> 131 <param name="template_source_select" value="list" />
132 <param name="pdbfile2" value="apoc/1yr8A.pdb" ftype="pdb" /> 132 <param name="lt" value="apoc/templ.lst" />
133 <output name="output_apoc"> 133 <param name="template_0|input" value="apoc/1ha3A.pdb" ftype="pdb" />
134 <assert_contents> 134 <param name="template_1|input" value="apoc/3ec1A.pdb" ftype="pdb" />
135 <has_text_matching expression="PDB\s*files\s*loaded" /> 135 <param name="template_2|input" value="apoc/1yr8A.pdb" ftype="pdb" />
136 </assert_contents> 136 </conditional>
137 </output> 137 <conditional name="query_source">
138 </test> 138 <param name="query_source_select" value="pdbfile" />
139 <test> 139 <param name="pdbfile2" value="apoc/1yr8A.pdb" ftype="pdb" />
140 <param name="template_source_select" value="list" /> 140 </conditional>
141 <param name="lt" value="apoc/templ.lst" /> 141 <output name="output_apoc">
142 <param name="template_0|input" value="apoc/1ha3A.pdb" ftype="pdb" /> 142 <assert_contents>
143 <param name="template_1|input" value="apoc/3ec1A.pdb" ftype="pdb" /> 143 <has_text_matching expression="PDB\s*files\s*loaded" />
144 <param name="template_2|input" value="apoc/1yr8A.pdb" ftype="pdb" /> 144 </assert_contents>
145 <param name="query_source_select" value="pdbfile" /> 145 </output>
146 <param name="pdbfile2" value="apoc/1ha3A.pdb" ftype="pdb" /> 146 </test>
147 <param name="pq" value="1ha3_GDP_A_406" /> 147 <test>
148 <output name="output_apoc"> 148 <conditional name="templates_source">
149 <assert_contents> 149 <param name="template_source_select" value="list" />
150 <has_text_matching expression="PDB\s*files\s*loaded" /> 150 <param name="lt" value="apoc/templ.lst" />
151 </assert_contents> 151 <param name="template_0|input" value="apoc/1ha3A.pdb" ftype="pdb" />
152 </output> 152 <param name="template_1|input" value="apoc/3ec1A.pdb" ftype="pdb" />
153 </test> 153 <param name="template_2|input" value="apoc/1yr8A.pdb" ftype="pdb" />
154 <test> 154 </conditional>
155 <param name="template_source_select" value="list" /> 155 <conditional name="query_source">
156 <param name="lt" value="apoc/templ.lst" /> 156 <param name="query_source_select" value="pdbfile" />
157 <param name="template_0|input" value="apoc/1ha3A.pdb" ftype="pdb" /> 157 <param name="pdbfile2" value="apoc/1ha3A.pdb" ftype="pdb" />
158 <param name="template_1|input" value="apoc/3ec1A.pdb" ftype="pdb" /> 158 <param name="pq" value="1ha3_GDP_A_406" />
159 <param name="template_2|input" value="apoc/1yr8A.pdb" ftype="pdb" /> 159 </conditional>
160 <param name="query_source_select" value="list" /> 160 <output name="output_apoc">
161 <param name="lq" value="apoc/query.lst" /> 161 <assert_contents>
162 <param name="query_0|input" value="apoc/3ec1A.pdb" ftype="pdb" /> 162 <has_text_matching expression="PDB\s*files\s*loaded" />
163 </assert_contents>
164 </output>
165 </test>
166 <test>
167 <conditional name="templates_source">
168 <param name="template_source_select" value="list" />
169 <param name="lt" value="apoc/templ.lst" />
170 <param name="template_0|input" value="apoc/1ha3A.pdb" ftype="pdb" />
171 <param name="template_1|input" value="apoc/3ec1A.pdb" ftype="pdb" />
172 <param name="template_2|input" value="apoc/1yr8A.pdb" ftype="pdb" />
173 </conditional>
174 <conditional name="query_source">
175 <param name="query_source_select" value="list" />
176 <param name="lq" value="apoc/query.lst" />
177 <param name="query_0|input" value="apoc/3ec1A.pdb" ftype="pdb" />
178 </conditional>
163 <output name="output_apoc"> 179 <output name="output_apoc">
164 <assert_contents> 180 <assert_contents>
165 <has_text_matching expression="PDB\s*files\s*loaded" /> 181 <has_text_matching expression="PDB\s*files\s*loaded" />
166 </assert_contents> 182 </assert_contents>
167 </output> 183 </output>