Mercurial > repos > earlhaminst > blast_parser

view blast_parser.xml @ 1:fd11653657f9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/blast_parser commit f5193377731efddd91919f5410a440e8d2864a9c-dirty
author earlhaminst
date Mon, 12 Dec 2016 07:22:09 -0500
parents 87eda806422d
children 376ed15e0d27
line wrap: on
line source

<tool id="blast_parser" name="BLAST parser" version="0.1.1">
    <description>
        Convert 12- or 24-column BLAST output into 3-column hcluster_sg input
    </description>

    <command>
<![CDATA[
perl $__tool_directory__/blast_parser.pl
$input
> $output
]]>
    </command>

    <inputs>
        <param name="input" type="data" format="tabular" label="Tabular data" help="BLAST 12 column tabular format data"/>
    </inputs>

    <outputs>
        <data name="output" format="tabular" label="$tool.name on ${on_string}" />
    </outputs>

    <tests>
        <test>
            <param name="input" ftype="tabular" value="input.tabular" />
            <output name="output" file="output.tabular" />
        </test>
    </tests>
    <help>
<![CDATA[
Simple tool to convert a 12- or 24-column BLAST output into a 3-column format (qseqid, sseqid, round(-1 * log10(evalue))) usable as input for the hcluster_sg tool.
]]>
    </help>
    <citations>
    </citations>
</tool>