Mercurial > repos > earlhaminst > ensembl_get_feature_info

comparison get_feature_info.xml @ 6:70e4134eb0ed draft

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"planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/Ensembl-REST commit ed32f2e6d8174873cefcbe141084f857f84b0586"
author earlhaminst
date Thu, 31 Oct 2019 07:49:48 -0400
parents 234d7babf34b
children d6bb417dc831
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5:234d7babf34b 6:70e4134eb0ed
8 <![CDATA[ 8 <![CDATA[
9 python '$__tool_directory__/get_feature_info.py' 9 python '$__tool_directory__/get_feature_info.py'
10 -e $expand 10 -e $expand
11 -f $format_selector 11 -f $format_selector
12 -i '$input' 12 -i '$input'
13 -s $species_selector
14 > '$output' 13 > '$output'
15 ]]> 14 ]]>
16 </command> 15 </command>
17 16
18 <inputs> 17 <inputs>
19 <param name="input" type="data" format="txt" label="List of Ensembl IDs" help="Max 1000 IDs" /> 18 <param name="input" type="data" format="txt" label="List of Ensembl IDs" help="Max 1000 IDs" />
20 <param name="species_selector" type="select" label="Select species">
21 <option value="ensembl" selected="true">Vertebrates</option>
22 <option value="ensemblgenomes">Other species</option>
23 </param>
24 <param name="expand" type="boolean" truevalue="1" falsevalue="0" label="Expand the search to include any connected features" help="For example, if the object is a gene, its transcripts, translations and exons will be returned as well" /> 19 <param name="expand" type="boolean" truevalue="1" falsevalue="0" label="Expand the search to include any connected features" help="For example, if the object is a gene, its transcripts, translations and exons will be returned as well" />
25 <param name="format_selector" type="select" label="Output format"> 20 <param name="format_selector" type="select" label="Output format">
26 <option value="full" selected="true">Full</option> 21 <option value="full" selected="true">Full</option>
27 <option value="condensed">Condensed</option> 22 <option value="condensed">Condensed</option>
28 </param> 23 </param>