# HG changeset patch
# User earlhaminst
# Date 1490371055 14400
# Node ID 181e12d6ac969277d2e74ba638ef14bc7369ebce
# Parent  950d9d11b6fb999e6040e043fc1edebf0bb9b7c0
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/Ensembl-REST commit f5c5f3d6ce676937f5c673ec7fc0631a9f490dc2

diff -r 950d9d11b6fb -r 181e12d6ac96 get_genetree.xml
--- a/get_genetree.xml	Wed Dec 21 15:16:35 2016 -0500
+++ b/get_genetree.xml	Fri Mar 24 11:57:35 2017 -0400
@@ -24,11 +24,11 @@
         <requirement type="package" version="2.12.4">requests</requirement>
         <requirement type="package" version="1.10.0">six</requirement>
     </requirements>
-    <command>
+    <command detect_errors="exit_code">
 <![CDATA[
-python $__tool_directory__/get_genetree.py
+python '$__tool_directory__/get_genetree.py'
 --id_type $input_type
--i "$input"
+-i '$input'
 -g $species_selector
 --format ${output_format.output_format_selector}
 #if $output_format.output_format_selector == 'json'
@@ -45,7 +45,7 @@
 #else
     --nh_format $output_format.nh_format
 #end if
-> "$output"
+> '$output'
 ]]>
     </command>