Mercurial > repos > earlhaminst > ensembl_get_genetree

changeset 9:667fd2d7a350 draft default tip

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/Ensembl-REST commit a0d7ab86b86bb764e457767bf8e8bc29868d0cbb
author earlhaminst
date Mon, 10 Mar 2025 23:26:15 +0000
parents 935de83b470b
children
files get_genetree.xml
diffstat 1 files changed, 27 insertions(+), 13 deletions(-) [+]
line wrap: on
line diff
--- a/get_genetree.xml	Mon Feb 17 14:49:15 2025 +0000
+++ b/get_genetree.xml	Mon Mar 10 23:26:15 2025 +0000
@@ -115,10 +115,14 @@
                 <param name="species" value="Chicken" />
             </conditional>
             <param name="input" value="ENSGALP00010009242" />
-            <param name="output_format_selector" value="json" />
-            <param name="sequence_selector" value="protein" />
-            <param name="aligned" value="0" />
-            <param name="cigar" value="0" />
+            <conditional name="output_format">
+                <param name="output_format_selector" value="json" />
+                <conditional name="sequence">
+                    <param name="sequence_selector" value="protein" />
+                    <param name="aligned" value="0" />
+                    <param name="cigar" value="0" />
+                </conditional>
+            </conditional>
             <output name="output" ftype="json">
                 <assert_contents>
                     <has_text text="tree" />
@@ -134,8 +138,10 @@
                 <param name="species" value="Chicken" />
             </conditional>
             <param name="input" value="ENSGALP00010009242" />
-            <param name="output_format_selector" value="nh" />
-            <param name="nh_format" value="simple" />
+            <conditional name="output_format">
+                <param name="output_format_selector" value="nh" />
+                <param name="nh_format" value="simple" />
+            </conditional>
             <output name="output" ftype="nhx">
                 <assert_contents>
                     <has_text text="ENSGALP00010009242" />
@@ -148,10 +154,14 @@
                 <param name="input_type" value="gene_tree_id" />
             </conditional>
             <param name="input" value="ENSGT00390000003602" />
-            <param name="output_format_selector" value="json" />
-            <param name="sequence_selector" value="protein" />
-            <param name="aligned" value="0" />
-            <param name="cigar" value="0" />
+            <conditional name="output_format">
+                <param name="output_format_selector" value="json" />
+                <conditional name="sequence">
+                    <param name="sequence_selector" value="protein" />
+                    <param name="aligned" value="0" />
+                    <param name="cigar" value="0" />
+                </conditional>
+            </conditional>
             <output name="output" ftype="json">
                 <assert_contents>
                     <has_text text="tree" />
@@ -166,9 +176,13 @@
                 <param name="input_type" value="gene_tree_id" />
             </conditional>
             <param name="input" value="ENSGT00390000003602" />
-            <param name="output_format_selector" value="phyloxml" />
-            <param name="sequence_selector" value="protein" />
-            <param name="aligned" value="0" />
+            <conditional name="output_format">
+                <param name="output_format_selector" value="phyloxml" />
+                <conditional name="sequence">
+                    <param name="sequence_selector" value="protein" />
+                    <param name="aligned" value="0" />
+                </conditional>
+            </conditional>
             <output name="output" ftype="phyloxml">
                 <assert_contents>
                     <has_text text="Euteleostomi" />