Mercurial > repos > earlhaminst > ensembl_get_sequences

comparison get_genetree.py @ 6:7af66c2b3831 draft default tip

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"planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/Ensembl-REST commit 17c65045b726d0695814bfe761e534f6521786f1"
author earlhaminst
date Tue, 20 Oct 2020 15:07:23 +0000
parents 0fa1d1cc417d
children
comparison
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5:0fa1d1cc417d 6:7af66c2b3831
29 help='The format of a NH (New Hampshire) request') 29 help='The format of a NH (New Hampshire) request')
30 options, args = parser.parse_args() 30 options, args = parser.parse_args()
31 if options.input is None: 31 if options.input is None:
32 raise Exception('-i option must be specified') 32 raise Exception('-i option must be specified')
33 33
34 server = 'http://rest.ensembl.org' 34 server = 'https://rest.ensembl.org'
35 35
36 if options.id_type == 'gene_id': 36 if options.id_type == 'gene_id':
37 ext = 'genetree/member/id' 37 ext = 'genetree/member/id'
38 elif options.id_type == 'gene_tree_id': 38 elif options.id_type == 'gene_tree_id':
39 ext = 'genetree/id' 39 ext = 'genetree/id'