Mercurial > repos > earlhaminst > ensembl_get_sequences

comparison get_sequences.xml @ 3:bce784076824 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/Ensembl-REST commit f5c5f3d6ce676937f5c673ec7fc0631a9f490dc2
author earlhaminst
date Fri, 24 Mar 2017 11:57:48 -0400
parents 4b7261f484bb
children 3b686142e9c2
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2:4b7261f484bb 3:bce784076824
2 <description>using REST API</description> 2 <description>using REST API</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.12.4">requests</requirement> 4 <requirement type="package" version="2.12.4">requests</requirement>
5 <requirement type="package" version="1.10.0">six</requirement> 5 <requirement type="package" version="1.10.0">six</requirement>
6 </requirements> 6 </requirements>
7 <command> 7 <command detect_errors="exit_code">
8 <![CDATA[ 8 <![CDATA[
9 python $__tool_directory__/get_sequences.py 9 python '$__tool_directory__/get_sequences.py'
10 -s $species_selector 10 -s $species_selector
11 --expand_3prime $expand_3prime 11 --expand_3prime $expand_3prime
12 --expand_5prime $expand_5prime 12 --expand_5prime $expand_5prime
13 -t $type_selector 13 -t $type_selector
14 -i "$input" 14 -i '$input'
15 > "$output" 15 > '$output'
16 ]]> 16 ]]>
17 </command> 17 </command>
18 18
19 <inputs> 19 <inputs>
20 <param name="input" type="data" format="txt" label="List of Ensembl IDs" /> 20 <param name="input" type="data" format="txt" label="List of Ensembl IDs" />