Mercurial > repos > earlhaminst > ensembl_get_sequences

comparison get_sequences.xml @ 7:c79ce2342f1e draft default tip

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/Ensembl-REST commit 8f8808de862973aedbf87abd4dfa9d2dc7219322
author earlhaminst
date Mon, 17 Feb 2025 14:49:24 +0000
parents 7af66c2b3831
children
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6:7af66c2b3831 7:c79ce2342f1e
1 <tool id="get_sequences" name="Get sequences by Ensembl ID" version="0.1.2"> 1 <tool id="get_sequences" name="Get sequences by Ensembl ID" version="1.0.0">
2 <description>using REST API</description> 2 <description>using REST API</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
3 <requirements> 6 <requirements>
4 <requirement type="package" version="2.12.4">requests</requirement> 7 <requirement type="package" version="3.13">python</requirement>
5 <requirement type="package" version="1.10.0">six</requirement> 8 <requirement type="package" version="2.32.3">requests</requirement>
6 </requirements> 9 </requirements>
7 <command detect_errors="exit_code"> 10 <command detect_errors="exit_code">
8 <![CDATA[ 11 <![CDATA[
9 python '$__tool_directory__/get_sequences.py' 12 python '$__tool_directory__/get_sequences.py'
10 --expand_3prime $expand_3prime 13 --expand_3prime $expand_3prime
55 Uses the `"POST sequence/id"`_ API endpoint. 58 Uses the `"POST sequence/id"`_ API endpoint.
56 59
57 .. _"POST sequence/id": https://rest.ensembl.org/documentation/info/sequence_id_post 60 .. _"POST sequence/id": https://rest.ensembl.org/documentation/info/sequence_id_post
58 ]]> 61 ]]>
59 </help> 62 </help>
60 <citations> 63 <expand macro="citations" />
61 </citations>
62 </tool> 64 </tool>