Mercurial > repos > earlhaminst > ete
comparison ete_lineage_generator.xml @ 3:077021c45b96 draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit a22e605b871c2185e98d89598aebb2fa3a82bb8f
author | earlhaminst |
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date | Mon, 12 Mar 2018 12:51:48 -0400 |
parents | 03c10736e497 |
children | 87b6de3ef63e |
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2:03c10736e497 | 3:077021c45b96 |
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113 <param name="levels" value="full" /> | 113 <param name="levels" value="full" /> |
114 <output name="outputFile" file="lineage-full.txt" /> | 114 <output name="outputFile" file="lineage-full.txt" /> |
115 </test> | 115 </test> |
116 </tests> | 116 </tests> |
117 <help><![CDATA[ | 117 <help><![CDATA[ |
118 Generates a table with lineage information for a list of species (also taxids and arbitrary taxons are accepted) using the .. _ETE Toolkit: http://etetoolkit.org/ | 118 Generates a table with lineage information for a list of species (also taxids and arbitrary taxons are accepted) using the `ETE Toolkit`_. |
119 | |
120 .. _ETE Toolkit: http://etetoolkit.org/ | |
119 | 121 |
120 **Input** | 122 **Input** |
121 | 123 |
122 - *Species file* a single column tabular file | 124 - *Species file* a single column tabular file |
123 - *(ETE3) Taxonomy Database* a sqlite database that has been created by ETE from the NCBI taxonomy dump | 125 - *(ETE3) Taxonomy Database* a sqlite database that has been created by ETE from the NCBI taxonomy dump |