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comparison ete_species_tree_generator.xml @ 15:1e85af7a29c4 draft default tip

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/ete commit 6e40bbe92367310e9d3ec69571d08eb49af7c0a6-dirty
author earlhaminst
date Mon, 24 Feb 2025 16:34:12 +0000
parents d40b9a7debe5
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14:d40b9a7debe5 15:1e85af7a29c4
21 #end if 21 #end if
22 -t $output_format.treebest 22 -t $output_format.treebest
23 ]]></command> 23 ]]></command>
24 <inputs> 24 <inputs>
25 <param name="speciesFile" type="data" format="txt" label="Species file" help="List with one species per line" /> 25 <param name="speciesFile" type="data" format="txt" label="Species file" help="List with one species per line" />
26 <param name="database" type="data" format="sqlite" label="(ETE3) Taxonomy Database" help="The sqlite formatted Taxonomy used by ETE3 (which is derived from NCBI taxonomy)" /> 26 <param name="database" type="data" format="sqlite" label="ETE3 Taxonomy Database" help="The SQLite Taxonomy Database generated by the 'ETE taxa DB generator' tool" />
27 <conditional name="output_format"> 27 <conditional name="output_format">
28 <param name="treebest" type="select" label="Use in TreeBest" help="Select yes if specie tree to be used in TreeBest"> 28 <param name="treebest" type="select" label="Use in TreeBest" help="Select yes if specie tree to be used in TreeBest">
29 <option value="yes">Yes</option> 29 <option value="yes">Yes</option>
30 <option value="no" selected="true">No</option> 30 <option value="no" selected="true">No</option>
31 </param> 31 </param>
64 </test> 64 </test>
65 </tests> 65 </tests>
66 <help><![CDATA[ 66 <help><![CDATA[
67 Generate a species tree from a list of species using the `ETE Toolkit`_. 67 Generate a species tree from a list of species using the `ETE Toolkit`_.
68 68
69 .. _ETE Toolkit: http://etetoolkit.org/ 69 .. _ETE Toolkit: https://etetoolkit.org/
70 70
71 **Output format:** 71 **Output format:**
72 72
73 ======= ============================================= ======================================================================================== 73 ======= ============================================= ========================================================================================
74 FORMAT DESCRIPTION SAMPLE 74 FORMAT DESCRIPTION SAMPLE