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comparison ete_species_tree_generator.xml @ 16:e4d5d9a69c9d draft default tip

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/ete commit a0d7ab86b86bb764e457767bf8e8bc29868d0cbb
author earlhaminst
date Mon, 10 Mar 2025 23:28:17 +0000
parents 1e85af7a29c4
children
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15:1e85af7a29c4 16:e4d5d9a69c9d
1 <tool id="ete_species_tree_generator" name="ETE species tree generator" version="@VERSION@"> 1 <tool id="ete_species_tree_generator" name="ETE species tree generator" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>from a list of species using the ETE Toolkit</description> 2 <description>from a list of species using the ETE Toolkit</description>
3 <macros> 3 <macros>
4 <import>ete_macros.xml</import> 4 <import>ete_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools"/> 6 <expand macro="bio_tools"/>
52 </outputs> 52 </outputs>
53 <tests> 53 <tests>
54 <test> 54 <test>
55 <param name="speciesFile" ftype="txt" value="species.txt" /> 55 <param name="speciesFile" ftype="txt" value="species.txt" />
56 <param name="database" ftype="sqlite" value="taxdump.sqlite" /> 56 <param name="database" ftype="sqlite" value="taxdump.sqlite" />
57 <param name="treebest" value="yes" /> 57 <conditional name="output_format">
58 <param name="treebest" value="yes" />
59 </conditional>
58 <output name="outputFile"> 60 <output name="outputFile">
59 <assert_contents> 61 <assert_contents>
60 <has_text text="(Homosapiens*,Pantroglodytes*,Gorillagorillagorilla*)" /> 62 <has_text text="(Homosapiens*,Pantroglodytes*,Gorillagorillagorilla*)" />
61 <has_text text=")root;" /> 63 <has_text text=")root;" />
62 </assert_contents> 64 </assert_contents>