Mercurial > repos > earlhaminst > ete
diff ete_lineage_generator.xml @ 4:87b6de3ef63e draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
| author | earlhaminst |
|---|---|
| date | Thu, 22 Mar 2018 13:25:38 -0400 |
| parents | 077021c45b96 |
| children | f1eca1158f21 |
line wrap: on
line diff
--- a/ete_lineage_generator.xml Mon Mar 12 12:51:48 2018 -0400 +++ b/ete_lineage_generator.xml Thu Mar 22 13:25:38 2018 -0400 @@ -12,7 +12,7 @@ #if $ranks.levels == "full" -f #elif $ranks.levels == "manual" - #for $rank in $ranks.manualranks: + #for $rank in str($ranks.manualranks).split(','): -r $rank #end for #end if @@ -31,7 +31,7 @@ <option value="manual">Manual</option> </param> <when value="manual"> - <param name="manualranks" type="select" multiple="true" label="Manual selection of ranks"> + <param name="manualranks" type="select" multiple="true" optional="false" label="Manual selection of ranks"> <option value="superkingdom">superkingdom</option> <option value="kingdom" selected="true">kingdom</option> <option value="subkingdom">subkingdom</option> @@ -88,7 +88,7 @@ <param name="speciesFile" ftype="txt" value="species.txt" /> <param name="database" ftype="sqlite" value="taxdump.sqlite" /> <param name="compress" value="" /> - <param name="levels" value="primary" /> + <param name="levels" value="full" /> <output name="outputFile" file="lineage.txt" /> </test> <test> @@ -110,7 +110,8 @@ <param name="speciesFile" ftype="txt" value="species.txt" /> <param name="database" ftype="sqlite" value="taxdump.sqlite" /> <param name="compress" value="" /> - <param name="levels" value="full" /> + <param name="levels" value="manual" /> + <param name="manualranks" value="kingdom,family" /> <output name="outputFile" file="lineage-full.txt" /> </test> </tests>