Mercurial > repos > earlhaminst > ete

diff ete_mod.xml @ 16:e4d5d9a69c9d draft default tip

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/ete commit a0d7ab86b86bb764e457767bf8e8bc29868d0cbb
author earlhaminst
date Mon, 10 Mar 2025 23:28:17 +0000
parents 1e85af7a29c4
children
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--- a/ete_mod.xml	Mon Feb 24 16:34:12 2025 +0000
+++ b/ete_mod.xml	Mon Mar 10 23:28:17 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="ete3_mod" name="ETE mod" version="@VERSION@">
+<tool id="ete3_mod" name="ETE mod" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>manipulates tree topology by rooting, pruning or sorting branches</description>
     <macros>
         <import>ete_macros.xml</import>
@@ -73,32 +73,32 @@
         <test>
             <param name="input_trees" ftype="nhx" value="tree1.nhx" />
             <param name="prune" value="A,C" />
-            <param name="prune_preserve_lengths" value="--prune_preserve_lengths" />
+            <param name="prune_preserve_lengths" value="true" />
             <output name="output_tree" file="tree1_pruneACpreserve.nhx" />
         </test>
         <test>
             <param name="input_trees" ftype="nhx" value="tree1.nhx" />
-            <param name="unroot" value="--unroot" />
+            <param name="unroot" value="true" />
             <output name="output_tree" file="tree1_unroot.nhx" />
         </test>
         <test>
             <param name="input_trees" ftype="nhx" value="tree2.nhx" />
-            <param name="sort_branches" value="--sort_branches" />
+            <param name="sort_branches" value="true" />
             <output name="output_tree" file="tree2_sort.nhx" />
         </test>
         <test>
             <param name="input_trees" ftype="nhx" value="tree1.nhx" />
-            <param name="ladderize" value="--ladderize" />
+            <param name="ladderize" value="true" />
             <output name="output_tree" file="tree1_ladder.nhx" />
         </test>
         <test>
             <param name="input_trees" ftype="nhx" value="tree1_unroot.nhx" />
-            <param name="resolve_polytomies" value="--resolve_polytomies" />
+            <param name="resolve_polytomies" value="true" />
             <output name="output_tree" file="tree1_unroot_resolve.nhx" />
         </test>
         <test>
             <param name="input_trees" ftype="nhx" value="tree3.nhx" />
-            <param name="standardize" value="--standardize" />
+            <param name="standardize" value="true" />
             <output name="output_tree" file="tree3_stand.nhx" />
         </test>
     </tests>