Mercurial > repos > earlhaminst > export_to_cluster
comparison export_to_cluster.xml @ 0:0dbe46f58158 draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
| author | earlhaminst |
|---|---|
| date | Thu, 11 Aug 2016 15:27:30 -0400 |
| parents | |
| children | b97775e9fe06 |
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| -1:000000000000 | 0:0dbe46f58158 |
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| 1 <tool id="export_to_cluster" name="Export datasets to cluster" version="0.0.1"> | |
| 2 <requirements> | |
| 3 <requirement type="set_environment">EXPORT_DIR_PREFIX</requirement> | |
| 4 </requirements> | |
| 5 <command> | |
| 6 <![CDATA[ | |
| 7 python $__tool_directory__/export_to_cluster.py -d '$export_dir' -p "\$EXPORT_DIR_PREFIX" | |
| 8 #for $d in $datasets | |
| 9 '${d}' '${d.hid}: ${d.name}' '${d.ext}' | |
| 10 #end for | |
| 11 > $log | |
| 12 ]]> | |
| 13 </command> | |
| 14 <inputs> | |
| 15 <param name="datasets" type="data" format="data" multiple="true" label="Datasets to export" /> | |
| 16 <param name="export_dir" type="text" value="" label="Directory where to export the datasets" help="Must be writable by the Galaxy user"> | |
| 17 <validator type="empty_field" /> | |
| 18 <sanitizer sanitize="false" /> | |
| 19 </param> | |
| 20 </inputs> | |
| 21 <outputs> | |
| 22 <data name="log" format="txt" /> | |
| 23 </outputs> | |
| 24 <tests> | |
| 25 </tests> | |
| 26 <help> | |
| 27 Simple tool to copy datasets to a directory on the cluster. | |
| 28 </help> | |
| 29 <citations/> | |
| 30 </tool> |