Mercurial > repos > earlhaminst > export_to_cluster
comparison export_to_cluster.py @ 3:9838eed606ad draft default tip
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit 68b62fd9a9d5586ccd539779873af17124b7dbb5
| author | earlhaminst |
|---|---|
| date | Wed, 09 May 2018 05:52:40 -0400 |
| parents | b97775e9fe06 |
| children |
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| 2:b97775e9fe06 | 3:9838eed606ad |
|---|---|
| 22 parser.error('Require an even number of arguments') | 22 parser.error('Require an even number of arguments') |
| 23 | 23 |
| 24 real_export_dir = os.path.realpath(options.export_dir) | 24 real_export_dir = os.path.realpath(options.export_dir) |
| 25 dir_prefix = options.dir_prefix.rstrip(os.sep) | 25 dir_prefix = options.dir_prefix.rstrip(os.sep) |
| 26 if not real_export_dir.startswith(dir_prefix): | 26 if not real_export_dir.startswith(dir_prefix): |
| 27 raise Exception("%s must be a subdirectory of %s" % (options.export_dir, dir_prefix)) | 27 raise Exception("'%s' must be a subdirectory of '%s'" % (options.export_dir, dir_prefix)) |
| 28 if not os.path.exists(real_export_dir): | 28 if not os.path.exists(real_export_dir): |
| 29 raise Exception("%s does not exist or it is not accessible by the Galaxy user" % options.export_dir) | 29 raise Exception("'%s' directory does not exist or it is not accessible by the Galaxy user" % options.export_dir) |
| 30 if not os.path.isdir(real_export_dir): | 30 if not os.path.isdir(real_export_dir): |
| 31 raise Exception("%s is not a directory" % options.export_dir) | 31 raise Exception("'%s' is not a directory" % options.export_dir) |
| 32 | 32 |
| 33 dataset_paths = args[::3] | 33 dataset_paths = args[::3] |
| 34 dataset_names = args[1::3] | 34 dataset_names = args[1::3] |
| 35 dataset_exts = args[2::3] | 35 dataset_exts = args[2::3] |
| 36 exit_code = 0 | 36 exit_code = 0 |