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comparison export_to_cluster.xml @ 3:9838eed606ad draft default tip

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit 68b62fd9a9d5586ccd539779873af17124b7dbb5
author earlhaminst
date Wed, 09 May 2018 05:52:40 -0400
parents b97775e9fe06
children
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2:b97775e9fe06 3:9838eed606ad
1 <tool id="export_to_cluster" name="Export datasets to cluster" version="0.0.1"> 1 <tool id="export_to_cluster" name="Export datasets to cluster" version="0.0.2">
2 <requirements> 2 <requirements>
3 <requirement type="set_environment">EXPORT_DIR_PREFIX</requirement> 3 <requirement type="set_environment">EXPORT_DIR_PREFIX</requirement>
4 </requirements> 4 </requirements>
5 <command detect_errors="aggressive"> 5 <command detect_errors="aggressive"><![CDATA[
6 <![CDATA[
7 python '$__tool_directory__/export_to_cluster.py' -d '$export_dir' -p "\$EXPORT_DIR_PREFIX" 6 python '$__tool_directory__/export_to_cluster.py' -d '$export_dir' -p "\$EXPORT_DIR_PREFIX"
8 #for $d in $datasets 7 #for $d in $datasets
9 '${d}' '${d.hid}: ${d.name}' '${d.ext}' 8 '${d}' '${d.hid}: ${d.element_identifier}' '${d.ext}'
10 #end for 9 #end for
11 > '$log' 10 > '$log'
12 ]]> 11 ]]></command>
13 </command>
14 <inputs> 12 <inputs>
15 <param name="datasets" type="data" format="data" multiple="true" label="Datasets to export" /> 13 <param name="datasets" type="data" format="data" multiple="true" label="Datasets to export" />
16 <param name="export_dir" type="text" value="" label="Directory where to export the datasets" help="Must be writable by the Galaxy user"> 14 <param name="export_dir" type="text" value="" label="Directory where to export the datasets" help="Must be writable by the Galaxy user">
17 <validator type="empty_field" /> 15 <validator type="empty_field" />
18 <sanitizer sanitize="false" /> 16 <sanitizer sanitize="false" />
21 <outputs> 19 <outputs>
22 <data name="log" format="txt" /> 20 <data name="log" format="txt" />
23 </outputs> 21 </outputs>
24 <tests> 22 <tests>
25 </tests> 23 </tests>
26 <help> 24 <help><![CDATA[
27 Simple tool to copy datasets to a directory on the cluster. 25 Simple tool to copy datasets to a directory on the cluster.
28 </help> 26 ]]></help>
29 <citations/> 27 <citations/>
30 </tool> 28 </tool>