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comparison GAFA.xml @ 9:ab5611663f32 draft default tip

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/GAFA/ commit d96cd7ee9c686c185b6734aa08ab5a891cc44149-dirty
author earlhaminst
date Mon, 03 Mar 2025 17:47:53 +0000
parents a6c4483a02be
children
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8:a6c4483a02be 9:ab5611663f32
1 <tool id="gafa" name="Gene Align and Family Aggregator" version="0.3.1"> 1 <tool id="gafa" name="Gene Align and Family Aggregator" version="0.4.0">
2 <description>generates an SQLite database that can be visualised with Aequatus</description> 2 <description>generates an SQLite database that can be visualised with Aequatus</description>
3 <requirements>
4 <requirement type="package" version="3.13">python</requirement>
5 </requirements>
3 <command detect_errors="exit_code"> 6 <command detect_errors="exit_code">
4 <![CDATA[ 7 <![CDATA[
5 python '$__tool_directory__/GAFA.py' 8 python3 '$__tool_directory__/GAFA.py'
6 #for $dataset in $treeFile: 9 #for $dataset in $treeFile:
7 -t '$dataset' 10 -t '$dataset'
8 #end for 11 #end for
9 #for $dataset in $alignmentFile: 12 #for $dataset in $alignmentFile:
10 -a '$dataset' 13 -a '$dataset'