annotate swissprot.ga @ 7:e732a731f778 draft default tip

planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 15c020a20c5dbf2fcb1cd9bb3865e9e936981f3c
author earlhaminst
date Thu, 01 Sep 2022 11:32:32 +0000
parents 06470b2e491f
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
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06470b2e491f planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 2c7c545579169dda723cd7d91d9ccef1c5061fed
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
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06470b2e491f planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 2c7c545579169dda723cd7d91d9ccef1c5061fed
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
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06470b2e491f planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 2c7c545579169dda723cd7d91d9ccef1c5061fed
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
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b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
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06470b2e491f planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 2c7c545579169dda723cd7d91d9ccef1c5061fed
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06470b2e491f planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 2c7c545579169dda723cd7d91d9ccef1c5061fed
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06470b2e491f planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 2c7c545579169dda723cd7d91d9ccef1c5061fed
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06470b2e491f planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 2c7c545579169dda723cd7d91d9ccef1c5061fed
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48 }
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49 },
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50 "inputs": [
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51 {
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54 }
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55 ],
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58 "outputs": [
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59 {
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60 "name": "out_file1",
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61 "type": "fasta"
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62 }
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67 },
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70 "action_arguments": {},
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71 "action_type": "HideDatasetAction",
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72 "output_name": "out_file1"
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74 },
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75 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: transeq101/5.0.0",
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76 "tool_shed_repository": {
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78 "name": "emboss_5",
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150 "description": "runtime parameter for tool Cut",
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155 "name": "Cut",
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235 {
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236 "description": "runtime parameter for tool UniProt",
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237 "name": "infile"
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238 }
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239 ],
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240 "label": null,
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241 "name": "UniProt",
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242 "outputs": [
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243 {
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244 "name": "outfile_retrieve_fasta",
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245 "type": "fasta"
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246 },
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247 {
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248 "name": "outfile_retrieve_gff",
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249 "type": "gff"
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250 },
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251 {
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253 "type": "txt"
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254 },
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255 {
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256 "name": "outfile_map",
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257 "type": "tabular"
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258 }
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259 ],
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263 },
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266 "action_arguments": {},
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267 "action_type": "HideDatasetAction",
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268 "output_name": "outfile_map"
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269 },
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270 "HideDatasetActionoutfile_retrieve_fasta": {
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271 "action_arguments": {},
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272 "action_type": "HideDatasetAction",
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273 "output_name": "outfile_retrieve_fasta"
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274 },
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275 "HideDatasetActionoutfile_retrieve_gff": {
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276 "action_arguments": {},
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277 "action_type": "HideDatasetAction",
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278 "output_name": "outfile_retrieve_gff"
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279 },
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280 "HideDatasetActionoutfile_retrieve_txt": {
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281 "action_arguments": {},
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282 "action_type": "HideDatasetAction",
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283 "output_name": "outfile_retrieve_txt"
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284 }
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285 },
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286 "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.1",
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287 "tool_shed_repository": {
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289 "name": "uniprot_rest_interface",
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290 "owner": "bgruening",
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291 "tool_shed": "toolshed.g2.bx.psu.edu"
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292 },
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293 "tool_state": "{\"__page__\": 0, \"tool\": \"{\\\"to\\\": {\\\"db_GenomeAnnotationDB\\\": \\\"ENSEMBL_TRS_ID\\\", \\\"__current_case__\\\": 9, \\\"category_TO\\\": \\\"GenomeAnnotationDB\\\"}, \\\"from\\\": {\\\"category_FROM\\\": \\\"uniprot\\\", \\\"db_uniprot_FROM\\\": \\\"ACC+ID\\\", \\\"__current_case__\\\": 0}, \\\"__current_case__\\\": 0, \\\"tool_choice\\\": \\\"map\\\"}\", \"__rerun_remap_job_id__\": null, \"infile\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"id_column\": \"\\\"1\\\"\"}",
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294 "tool_version": "0.1",
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295 "type": "tool",
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296 "uuid": "8802d99a-7699-4c13-8d53-ea2c22280808",
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297 "workflow_outputs": []
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298 },
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299 "6": {
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300 "annotation": "",
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301 "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.1",
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302 "errors": null,
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303 "id": 6,
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304 "input_connections": {
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305 "infile": {
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306 "id": 4,
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307 "output_name": "out_file1"
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308 }
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309 },
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310 "inputs": [
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311 {
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earlhaminst
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312 "description": "runtime parameter for tool UniProt",
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313 "name": "infile"
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314 }
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315 ],
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317 "name": "UniProt",
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318 "outputs": [
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320 "name": "outfile_retrieve_fasta",
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322 },
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324 "name": "outfile_retrieve_gff",
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329 "type": "txt"
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332 "name": "outfile_map",
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334 }
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344 "output_name": "outfile_map"
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345 },
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354 "output_name": "outfile_retrieve_gff"
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358 "action_type": "HideDatasetAction",
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359 "output_name": "outfile_retrieve_txt"
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360 }
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361 },
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362 "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.1",
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363 "tool_shed_repository": {
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365 "name": "uniprot_rest_interface",
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368 },
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370 "tool_version": "0.1",
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371 "type": "tool",
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372 "uuid": "011b53a7-1aae-4bf1-af40-2df13c2cf41b",
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373 "workflow_outputs": []
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374 },
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376 "annotation": "",
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377 "content_id": "Cut1",
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379 "id": 7,
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380 "input_connections": {
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381 "input": {
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382 "id": 5,
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383 "output_name": "outfile_map"
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384 }
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385 },
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386 "inputs": [
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387 {
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388 "description": "runtime parameter for tool Cut",
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389 "name": "input"
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390 }
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547 "tool_state": "{\"__page__\": 0, \"species_selector\": \"\\\"ensembl\\\"\", \"__rerun_remap_job_id__\": null, \"format_selector\": \"\\\"full\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"expand\": \"\\\"false\\\"\"}",
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
diff changeset
548 "tool_version": "0.1.2",
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
diff changeset
549 "type": "tool",
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
diff changeset
550 "uuid": "29de2a25-3a3d-42b5-aa68-994f8eeb8820",
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
diff changeset
551 "workflow_outputs": [
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
diff changeset
552 {
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
diff changeset
553 "label": null,
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
diff changeset
554 "output_name": "output",
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
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555 "uuid": "caa4c8d9-8487-4d6c-8284-ea63ab9ca3d4"
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
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556 }
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
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557 ]
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
parents:
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558 }
b92f5ab6d127 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 9c148d5ba49d9de5f7b1c1f4b32cd8b5e56cb975-dirty
earlhaminst
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559 },
5
06470b2e491f planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 2c7c545579169dda723cd7d91d9ccef1c5061fed
earlhaminst
parents: 0
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560 "tags": [],
06470b2e491f planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 2c7c545579169dda723cd7d91d9ccef1c5061fed
earlhaminst
parents: 0
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561 "uuid": "ad63688b-8569-4d99-b86d-97e90141ce83"
06470b2e491f planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 2c7c545579169dda723cd7d91d9ccef1c5061fed
earlhaminst
parents: 0
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562 }