Mercurial > repos > earlhaminst > geneseqtofamily
diff finding_orphan_genes.ga @ 1:267a94f068d7 draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/workflows/GeneSeqToFamily commit 424b04f764977420ce4d92ebee5929fa18a30efb-dirty
author | earlhaminst |
---|---|
date | Mon, 20 Feb 2017 12:57:16 -0500 |
parents | b92f5ab6d127 |
children |
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--- a/finding_orphan_genes.ga Mon Jan 09 15:06:04 2017 -0500 +++ b/finding_orphan_genes.ga Mon Feb 20 12:57:16 2017 -0500 @@ -15,12 +15,12 @@ "name": "blast_parser data" } ], - "label": null, + "label": "blast_parser data", "name": "Input dataset", "outputs": [], "position": { - "left": 199.94483947753906, - "top": 276.4521942138672 + "left": 199.9375, + "top": 276.4375 }, "tool_errors": null, "tool_id": null, @@ -47,12 +47,12 @@ "name": "CDS" } ], - "label": null, + "label": "CDS", "name": "Input dataset", "outputs": [], "position": { - "left": 195.93748474121094, - "top": 553.3639373779297 + "left": 195.921875, + "top": 553.359375 }, "tool_errors": null, "tool_id": null, @@ -69,9 +69,41 @@ ] }, "2": { + "annotation": "List of IDs discarded from hcluster_sg results", + "content_id": null, + "id": 2, + "input_connections": {}, + "inputs": [ + { + "description": "List of IDs discarded from hcluster_sg results", + "name": "hcluster_sg discarded" + } + ], + "label": "hcluster_sg discarded", + "name": "Input dataset", + "outputs": [], + "position": { + "left": 191, + "top": 697 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"hcluster_sg discarded\"}", + "tool_version": null, + "type": "data_input", + "uuid": "3866a37f-3309-4c5d-8ed9-bb7c21d25d8a", + "workflow_outputs": [ + { + "label": null, + "output_name": "output", + "uuid": "f9fe709d-8a1b-44b0-9989-688af44b16ad" + } + ] + }, + "3": { "annotation": "", "content_id": "Cut1", - "id": 2, + "id": 3, "input_connections": { "input": { "id": 0, @@ -93,8 +125,8 @@ } ], "position": { - "left": 429.9632110595703, - "top": 276.4521942138672 + "left": 429.953125, + "top": 276.4375 }, "post_job_actions": { "HideDatasetActionout_file1": { @@ -111,10 +143,10 @@ "uuid": "3d809485-291c-4858-ade6-2f465bf667f0", "workflow_outputs": [] }, - "3": { + "4": { "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/fasta_to_tabular/fasta2tab/1.1.0", - "id": 3, + "id": 4, "input_connections": { "input": { "id": 1, @@ -136,8 +168,8 @@ } ], "position": { - "left": 429.9632110595703, - "top": 389.44850158691406 + "left": 429.953125, + "top": 389.4375 }, "post_job_actions": { "HideDatasetActionoutput": { @@ -160,13 +192,13 @@ "uuid": "614def54-f941-49a4-950c-69f651e6b35f", "workflow_outputs": [] }, - "4": { + "5": { "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0", - "id": 4, + "id": 5, "input_connections": { "infile": { - 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"left": 917.9411773681641, - "top": 198.47425842285156 + "left": 917.9375, + "top": 198.46875 }, "post_job_actions": { "HideDatasetActionout_file1": { @@ -295,17 +327,17 @@ "uuid": "d6dc6ba2-efc0-4e90-8562-4739c4f41fab", "workflow_outputs": [] }, - "7": { + "8": { "annotation": "", "content_id": "comp1", - "id": 7, + "id": 8, "input_connections": { "input1": { - "id": 5, + "id": 6, "output_name": "out_file1" }, "input2": { - "id": 6, + "id": 7, "output_name": "out_file1" } }, @@ -328,8 +360,8 @@ } ], "position": { - "left": 1123.952163696289, - "top": 363.4558563232422 + "left": 1123.9375, + "top": 363.453125 }, "post_job_actions": { "HideDatasetActionout_file1": { @@ -346,13 +378,60 @@ "uuid": "7c71fbae-828d-4c99-8f7b-fe1a90b27626", "workflow_outputs": [] }, - "8": { + "9": { + "annotation": "", + "content_id": "cat1", + "id": 9, + "input_connections": { + "input1": { + "id": 8, + "output_name": "out_file1" + }, + "queries_0|input2": { + "id": 2, + "output_name": "output" + } + }, + "inputs": [ + { + "description": "runtime parameter for tool Concatenate datasets", + "name": "input1" + } + ], + "label": null, + "name": "Concatenate datasets", + "outputs": [ + { + "name": "out_file1", + "type": "input" + } + ], + "position": { + "left": 1130.5, + "top": 686 + }, + "post_job_actions": { + "HideDatasetActionout_file1": { + "action_arguments": {}, + "action_type": "HideDatasetAction", + "output_name": "out_file1" + } + }, + "tool_errors": null, + "tool_id": "cat1", + "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input1\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"queries\": \"[{\\\"input2\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__index__\\\": 0}]\"}", + "tool_version": "1.0.0", + "type": "tool", + "uuid": "8a1e29ca-8dec-4143-9db1-f38f820b0e9a", + "workflow_outputs": [] + }, + "10": { "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/filter_by_fasta_ids/filter_by_fasta_ids/1.0", - "id": 8, + "id": 10, "input_connections": { "identifiers": { - "id": 7, + "id": 9, "output_name": "out_file1" }, "input": { @@ -379,8 +458,8 @@ } ], "position": { - "left": 1129.9264068603516, - "top": 544.4669036865234 + "left": 1392.921875, + "top": 550.453125 }, "post_job_actions": {}, "tool_errors": null, @@ -404,5 +483,5 @@ ] } }, - "uuid": "23e0aa20-d91a-429e-817c-654a67b0a171" -} \ No newline at end of file + "uuid": "cf6b9210-2ed8-46b1-920e-ac6303ed44d5" +}