Mercurial > repos > earlhaminst > gstf_preparation
comparison gstf_preparation.xml @ 16:4340eef6ec1b draft default tip
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/gstf_preparation commit 6e40bbe92367310e9d3ec69571d08eb49af7c0a6-dirty
| author | earlhaminst |
|---|---|
| date | Mon, 24 Feb 2025 11:15:06 +0000 |
| parents | 51a7a2a82902 |
| children |
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| 15:9c62ad7dd113 | 16:4340eef6ec1b |
|---|---|
| 103 <param name="headers" value="TranscriptId_species" /> | 103 <param name="headers" value="TranscriptId_species" /> |
| 104 | 104 |
| 105 <output name="output_db" file="test4.sqlite" compare="sim_size" delta="30000" /> | 105 <output name="output_db" file="test4.sqlite" compare="sim_size" delta="30000" /> |
| 106 <output name="output_fasta" file="test4.fasta" /> | 106 <output name="output_fasta" file="test4.fasta" /> |
| 107 </test> | 107 </test> |
| 108 <test> | 108 <test expect_num_outputs="3"> |
| 109 <param name="json" ftype="json" value="gene.json" /> | 109 <param name="json" ftype="json" value="gene.json" /> |
| 110 <param name="fasta_inputs" ftype="fasta" value="CDS.fasta" /> | 110 <param name="fasta_inputs" ftype="fasta" value="CDS.fasta" /> |
| 111 <param name="filter" value="coding" /> | 111 <param name="filter" value="coding" /> |
| 112 <param name="headers" value="TranscriptId_species" /> | 112 <param name="headers" value="TranscriptId_species" /> |
| 113 <param name="regions" value="X" /> | 113 <param name="regions" value="X" /> |
| 163 .. class:: warningmark | 163 .. class:: warningmark |
| 164 | 164 |
| 165 If a value in the **ID** and **Parent** attribute contains a colon, everything up to the first colon will be discarded. | 165 If a value in the **ID** and **Parent** attribute contains a colon, everything up to the first colon will be discarded. |
| 166 ]]></help> | 166 ]]></help> |
| 167 <citations> | 167 <citations> |
| 168 <citation type="doi">https://doi.org/10.1093/gigascience/giy005</citation> | |
| 168 </citations> | 169 </citations> |
| 169 </tool> | 170 </tool> |