Mercurial > repos > earlhaminst > gstf_preparation

comparison gstf_preparation.xml @ 13:51a7a2a82902 draft

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"planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gstf_preparation commit 9178f870760132962f8d3a26ea55c201880bb018-dirty"
author earlhaminst
date Tue, 06 Oct 2020 17:10:37 +0000
parents 99bae410128c
children
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12:99bae410128c 13:51a7a2a82902
45 <option value="">All transcripts</option> 45 <option value="">All transcripts</option>
46 </param> 46 </param>
47 47
48 <param name="headers" type="select" display="radio" label="Change the header line of the FASTA sequences to the following format" help="As required by TreeBest, part of the GeneSeqToFamily workflow, only TranscriptId_species is acceptable format by Aequatus visualisation"> 48 <param name="headers" type="select" display="radio" label="Change the header line of the FASTA sequences to the following format" help="As required by TreeBest, part of the GeneSeqToFamily workflow, only TranscriptId_species is acceptable format by Aequatus visualisation">
49 <option value="TranscriptId_species" selected="true">TranscriptId_species</option> 49 <option value="TranscriptId_species" selected="true">TranscriptId_species</option>
50 <option value="TranscriptID-GeneSymbol_species">GeneSymbol-TranscriptID_species</option> 50 <option value="TranscriptID-GeneSymbol_species">TranscriptID-GeneSymbol_species</option>
51 <option value="TranscriptID-TranscriptSymbol_species">TranscriptSymbol-TranscriptID_species</option> 51 <option value="TranscriptID-TranscriptSymbol_species">TranscriptID-TranscriptSymbol_species</option>
52 <option value="">Don't change</option> 52 <option value="">Don't change</option>
53 </param> 53 </param>
54 <param name="regions" type="text" optional="true" label="Comma-separated list of region IDs (e.g. chromosomes or scaffolds) for which FASTA sequences should be filtered out" help="Region IDs are in the `seqid` column for GFF3 and in the `seq_region_name` field in JSON. This is typically used to filter out chromosomes with a non-standard genetic code, like mitochondria, to be analysed separately" /> 54 <param name="regions" type="text" optional="true" label="Comma-separated list of region IDs (e.g. chromosomes or scaffolds) for which FASTA sequences should be filtered out" help="Region IDs are in the `seqid` column for GFF3 and in the `seq_region_name` field in JSON. This is typically used to filter out chromosomes with a non-standard genetic code, like mitochondria, to be analysed separately" />
55 </inputs> 55 </inputs>
56 56