Mercurial > repos > earlhaminst > gstf_preparation

comparison gstf_preparation.py @ 1:a36645976342 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gstf_preparation commit 68cf06ec77e20eaf057d77d5bea19e201c4ab27e-dirty
author earlhaminst
date Thu, 16 Mar 2017 12:41:51 -0400
parents 28879ca33b5f
children 7e11a7f4bdba
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0:28879ca33b5f 1:a36645976342
110 'member_id': gene_count, 110 'member_id': gene_count,
111 'object_type': 'Gene', 111 'object_type': 'Gene',
112 'seq_region_name': cols[0], 112 'seq_region_name': cols[0],
113 'species': species, 113 'species': species,
114 'Transcript': [], 114 'Transcript': [],
115 'display_name': gene['Name'] 115 'display_name': gene.get('Name', None)
116 }) 116 })
117 if gene['id']: 117 if gene['id']:
118 gene_dict[gene['id']] = gene 118 gene_dict[gene['id']] = gene
119 gene_count = gene_count + 1 119 gene_count = gene_count + 1
120 120