Mercurial > repos > earlhaminst > gstf_preparation

diff test-data/Caenorhabditis_elegans.WBcel235.cds.all.shortened.fa @ 0:28879ca33b5f draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gstf_preparation commit 651fae48371f845578753052c6fe173e3bb35670
author earlhaminst
date Wed, 15 Mar 2017 20:18:57 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Caenorhabditis_elegans.WBcel235.cds.all.shortened.fa	Wed Mar 15 20:18:57 2017 -0400
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+>Y74C9A.3 cds chromosome:WBcel235:I:4119:10230:-1 gene:WBGene00022277 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:homt-1 description:Alpha N-terminal protein methyltransferase 1  [Source:UniProtKB/Swiss-Prot;Acc:Q9N4D9]
+ATGAGCTCTTCATCATCTTCTAGAATTCACAATGGTGAAGATGTTTATGAAAAGGCGGAG
+GAATACTGGAGCCGCGCGAGCCAGGACGTCAACGGAATGCTCGGCGGATTCGAAGCGCTT
+CACGCGCCCGACATATCGGCGTCGAAACGATTTATTGAAGGACTGAAGAAAAAGAATCTA
+TTCGGCTACTTTGACTATGCACTGGACTGCGGAGCGGGTATCGGACGTGTTACAAAGCAT
+CTCTTAATGCCATTCTTCTCGAAAGTTGATATGGAAGACGTCGTCGAGGAGTTGATCACG
+AAAAGTGATCAATATATTGGAAAACATCCACGAATTGGAGATAAATTCGTCGAAGGACTG
+CAGACGTTTGCACCGCCCGAACGACGTTATGATTTGATATGGATTCAATGGGTTTCAGGG
+CATTTGGTTGATGAGGATTTGGTTGATTTCTTTAAAAGATGTGCGAAAGGACTGAAACCT
+GGTGGATGTATTGTGCTCAAGGATAATGTGACAAATCACGAGAAACGGTTATTCGACGAT
+GATGATCATAGTTGGACGAGAACAGAGCCCGAGCTTCTTAAAGCGTTCGCCGATTCTCAA
+CTGGACATGGTCTCGAAAGCACTGCAAACCGGATTCCCAAAGGAGATTTATCCAGTAAAA
+ATGTATGCATTGAAGCCTCAACACACCGGATTCACCAATAATTGA
+>Y74C9A.2a.1 cds chromosome:WBcel235:I:11618:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein  [Source:RefSeq peptide;Acc:NP_001293206]
+ATGAAACTCGTAATTCTGCTATCTTTTGTTGCGACAGTTGCGGTTTTTGCGGCTCCATCG
+GCTCCGGCAGGTCTCGAGGAGAAGCTGCGTGCTCTTCAGGAGCAACTGTACAGTCTGGAG
+AAAGAGAACGGAGTTGATGTGAAGCAAAAGGAGCAACCAGCAGCAGCCGACACATTCCTT
+GGATTTGTTCCACAGAAGAGAATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAAT
+GAGGATTCTAGAGCTCCATTGCTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGA
+GCCGGAGAACGCCTCGGAGTCAACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAAT
+CAATTCCAATAA
+>Y74C9A.2a.2 cds chromosome:WBcel235:I:10413:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein  [Source:RefSeq peptide;Acc:NP_001293206]
+ATGAAACTCGTAATTCTGCTATCTTTTGTTGCGACAGTTGCGGTTTTTGCGGCTCCATCG
+GCTCCGGCAGGTCTCGAGGAGAAGCTGCGTGCTCTTCAGGAGCAACTGTACAGTCTGGAG
+AAAGAGAACGGAGTTGATGTGAAGCAAAAGGAGCAACCAGCAGCAGCCGACACATTCCTT
+GGATTTGTTCCACAGAAGAGAATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAAT
+GAGGATTCTAGAGCTCCATTGCTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGA
+GCCGGAGAACGCCTCGGAGTCAACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAAT
+CAATTCCAATAA
+>Y74C9A.2a.3 cds chromosome:WBcel235:I:11505:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein  [Source:RefSeq peptide;Acc:NP_001293206]
+ATGAAACTCGTAATTCTGCTATCTTTTGTTGCGACAGTTGCGGTTTTTGCGGCTCCATCG
+GCTCCGGCAGGTCTCGAGGAGAAGCTGCGTGCTCTTCAGGAGCAACTGTACAGTCTGGAG
+AAAGAGAACGGAGTTGATGTGAAGCAAAAGGAGCAACCAGCAGCAGCCGACACATTCCTT
+GGATTTGTTCCACAGAAGAGAATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAAT
+GAGGATTCTAGAGCTCCATTGCTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGA
+GCCGGAGAACGCCTCGGAGTCAACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAAT
+CAATTCCAATAA
+>Y74C9A.2b.1 cds chromosome:WBcel235:I:11499:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein  [Source:RefSeq peptide;Acc:NP_001293206]
+ATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAATGAGGATTCTAGAGCTCCATTG
+CTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGAGCCGGAGAACGCCTCGGAGTC
+AACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAATCAATTCCAATAA
+>Y74C9A.2b.2 cds chromosome:WBcel235:I:11495:16793:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein  [Source:RefSeq peptide;Acc:NP_001293206]
+ATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAATGAGGATTCTAGAGCTCCATTG
+CTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGAGCCGGAGAACGCCTCGGAGTC
+AACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAATCAATTCCAATAA
+>Y74C9A.2b.3 cds chromosome:WBcel235:I:11623:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein  [Source:RefSeq peptide;Acc:NP_001293206]
+ATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAATGAGGATTCTAGAGCTCCATTG
+CTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGAGCCGGAGAACGCCTCGGAGTC
+AACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAATCAATTCCAATAA
+>Y74C9A.2b.4 cds chromosome:WBcel235:I:11499:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein  [Source:RefSeq peptide;Acc:NP_001293206]
+ATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAATGAGGATTCTAGAGCTCCATTG
+CTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGAGCCGGAGAACGCCTCGGAGTC
+AACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAATCAATTCCAATAA
+>Y74C9A.4a cds chromosome:WBcel235:I:17483:26781:-1 gene:WBGene00022278 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rcor-1 description:RCOR (REST CO-Repressor) homolog  [Source:RefSeq peptide;Acc:NP_001293207]
+ATGGATTCGTACACGTCATCTGACGAAGACGCCTCTCGAAAAGAAAACGAAGGCTTGAAT
+ATGTTGAATGCATCGCCGGAGCCAATGGAGGAAGATGATCCAGAGGAGCAGGCGGAACAA
+GAAGAAGAAACCAGCAGAATGGCTCGTCCTATAAGATCCATGAGAAAACGCGAAACAACG
+TCTGGGGAATCAATGGGCGATGAGGATGAAGATTTGGAGGATGAAGAGGACGAAGATGAA
+GAAGCTGAAGCTCGTGAGCATCATGAAAGTGGTGCTCATGACACATCTTTCTCAAATCCA
+CTTTCCAACGTCGACAATCTAATCCACGTGGGAACCGAATATCAGGCGATTATACAGCCA
+ACTGCAGAGCAATTGGAAAAAGAACCGTGCAGAGATCAACAAATTTGGGCGTTTCCAGAC
+GAAATGAACGAGAATCGGCTTACAGAATACATTTCAGAAGCTACTGGACGATATCAATTA
+CCTATAGATAGGGCTCTGTTCATTCTGAACAAACAGTCAAATGATTTCGACGCTGCGATG
+GTTCAAGCGATGAGAAGAAAAGAAATTCATGATGATTGGACGGCAGAAGAAATTAGTCTT
+TTCTCCACTTGCTTCTTTCATTTCGGAAAACGGTTCAAGAAGATTCATGCGGCTATGCCC
+CAACGCTCGCTTTCTTCCATTATCCAATACTATTACAACACGAAAAAAGTGCAAAACTAT
+AAAACAATGATTAATGTGCATTTGAATGAAACCGACACTTATGATGAACTATTCAAAGAG
+GTCAATCATTTGGAGAGGGTTCCGTCGGGATATTGTGAGAATTGCAATGCAAAAAGTGAT
+CTGTTGATTCTAAATCGTGTAATGTCGCGTCACGAATGTAAACCGTGTATCCTTTATTTC
+CGTTTGATGCGTGTTCCACGTCCGGCAAGCCTCCGTGCACTGACAAAACGACGGCAACGA
+GTTTTATGTCCAGAATACATGAAAATTTATGTATACGGATATCTTGAGCTCATGGAGCCA
+GCCAACGGAAAAGCGATCAAACGGCTTGGAATTGGAAAAGAAAAAGAAGAAGACGATGAT
+ATTATGGTGGTCGACGACTGCCTTCTCCGTAAACCATCAGGCCCCTACATTGTGGAGCAA
+TCGATTGAAGCTGATCCAATCGATGAGAATACGTGCAGAATGACACGGTGCTTCGATACA
+CCGGCTGCACTGGCATTAATTGATAATATCAAGAGAAAACATCATATGTGTGTTCCACTT
+GTTTGGAGAGTTAAACAAACGAAATGTATGGAGGAGAACGAAATTCTGAATGAAGAAGCC
+CGTCAACAAATGTTCCGTGCAACAATGACATACAGCCGTGTACCAAAAGGAGAAATTGCA
+AATTGGAAGAAAGATATGATGGCGTTGAAGGGAAGATTCGAGAGATTTACTCCTGAACTA
+GATACTACTGCAACAAATGGCAATCGATCTGGAAAAGTCAGGATAAATTATGGTTGGAGT
+CCTGAGGAAAAGAAGAATGCTATTAGATGTTTCCACTGGTACAAGGACAATTTCGAGTTG
+ATCGCCGAGTTGATGGCCACAAAAACTGTGGAACAAATCAAAAAGTTCTATATGGACAAT
+GAAAAGCTAATTTTGGAGTCAATCGACACGTATCGCGCCGAGCTCAAGTCAAAACTCGGC
+AAATAA
+>Y74C9A.4b cds chromosome:WBcel235:I:17483:26778:-1 gene:WBGene00022278 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rcor-1 description:RCOR (REST CO-Repressor) homolog  [Source:RefSeq peptide;Acc:NP_001293207]
+ATGGATTCGTACACGTCATCTGACGAAGACGCCTCTCGAAAAGAAAATATTTCAGACGAA
+GGCTTGAATATGTTGAATGCATCGCCGGAGCCAATGGAGGAAGATGATCCAGAGGAGCAG
+GCGGAACAAGAAGAAGAAACCAGCAGAATGGCTCGTCCTATAAGATCCATGAGAAAACGC
+GAAACAACGTCTGGGGAATCAATGGGCGATGAGGATGAAGATTTGGAGGATGAAGAGGAC
+GAAGATGAAGAAGCTGAAGCTCGTGAGCATCATGAAAGTGGTGCTCATGACACATCTTTC
+TCAAATCCACTTTCCAACGTCGACAATCTAATCCACGTGGGAACCGAATATCAGGCGATT
+ATACAGCCAACTGCAGAGCAATTGGAAAAAGAACCGTGCAGAGATCAACAAATTTGGGCG
+TTTCCAGACGAAATGAACGAGAATCGGCTTACAGAATACATTTCAGAAGCTACTGGACGA
+TATCAATTACCTATAGATAGGGCTCTGTTCATTCTGAACAAACAGTCAAATGATTTCGAC
+GCTGCGATGGTTCAAGCGATGAGAAGAAAAGAAATTCATGATGATTGGACGGCAGAAGAA
+ATTAGTCTTTTCTCCACTTGCTTCTTTCATTTCGGAAAACGGTTCAAGAAGATTCATGCG
+GCTATGCCCCAACGCTCGCTTTCTTCCATTATCCAATACTATTACAACACGAAAAAAGTG
+CAAAACTATAAAACAATGATTAATGTGCATTTGAATGAAACCGACACTTATGATGAACTA
+TTCAAAGAGGTCAATCATTTGGAGAGGGTTCCGTCGGGATATTGTGAGAATTGCAATGCA
+AAAAGTGATCTGTTGATTCTAAATCGTGTAATGTCGCGTCACGAATGTAAACCGTGTATC
+CTTTATTTCCGTTTGATGCGTGTTCCACGTCCGGCAAGCCTCCGTGCACTGACAAAACGA
+CGGCAACGAGTTTTATGTCCAGAATACATGAAAATTTATGTATACGGATATCTTGAGCTC
+ATGGAGCCAGCCAACGGAAAAGCGATCAAACGGCTTGGAATTGGAAAAGAAAAAGAAGAA
+GACGATGATATTATGGTGGTCGACGACTGCCTTCTCCGTAAACCATCAGGCCCCTACATT
+GTGGAGCAATCGATTGAAGCTGATCCAATCGATGAGAATACGTGCAGAATGACACGGTGC
+TTCGATACACCGGCTGCACTGGCATTAATTGATAATATCAAGAGAAAACATCATATGTGT
+GTTCCACTTGTTTGGAGAGTTAAACAAACGAAATGTATGGAGGAGAACGAAATTCTGAAT
+GAAGAAGCCCGTCAACAAATGTTCCGTGCAACAATGACATACAGCCGTGTACCAAAAGGA
+GAAATTGCAAATTGGAAGAAAGATATGATGGCGTTGAAGGGAAGATTCGAGAGATTTACT
+CCTGAACTAGATACTACTGCAACAAATGGCAATCGATCTGGAAAAGTCAGGATAAATTAT
+GGTTGGAGTCCTGAGGAAAAGAAGAATGCTATTAGATGTTTCCACTGGTACAAGGACAAT
+TTCGAGTTGATCGCCGAGTTGATGGCCACAAAAACTGTGGAACAAATCAAAAAGTTCTAT
+ATGGACAATGAAAAGCTAATTTTGGAGTCAATCGACACGTATCGCGCCGAGCTCAAGTCA
+AAACTCGGCAAATAA
+>Y74C9A.4c cds chromosome:WBcel235:I:17483:26643:-1 gene:WBGene00022278 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rcor-1 description:RCOR (REST CO-Repressor) homolog  [Source:RefSeq peptide;Acc:NP_001293207]
+ATGGAGGAAGATGATCCAGAGGAGCAGGCGGAACAAGAAGAAGAAACCAGCAGAATGGCT
+CGTCCTATAAGATCCATGAGAAAACGCGAAACAACGTCTGGGGAATCAATGGGCGATGAG
+GATGAAGATTTGGAGGATGAAGAGGACGAAGATGAAGAAGCTGAAGCTCGTGAGCATCAT
+GAAAGTGGTGCTCATGACACATCTTTCTCAAATCCACTTTCCAACGTCGACAATCTAATC
+CACGTGGGAACCGAATATCAGGCGATTATACAGCCAACTGCAGAGCAATTGGAAAAAGAA
+CCGTGCAGAGATCAACAAATTTGGGCGTTTCCAGACGAAATGAACGAGAATCGGCTTACA
+GAATACATTTCAGAAGCTACTGGACGATATCAATTACCTATAGATAGGGCTCTGTTCATT
+CTGAACAAACAGTCAAATGATTTCGACGCTGCGATGGTTCAAGCGATGAGAAGAAAAGAA
+ATTCATGATGATTGGACGGCAGAAGAAATTAGTCTTTTCTCCACTTGCTTCTTTCATTTC
+GGAAAACGGTTCAAGAAGATTCATGCGGCTATGCCCCAACGCTCGCTTTCTTCCATTATC
+CAATACTATTACAACACGAAAAAAGTGCAAAACTATAAAACAATGATTAATGTGCATTTG
+AATGAAACCGACACTTATGATGAACTATTCAAAGAGGTCAATCATTTGGAGAGGGTTCCG
+TCGGGATATTGTGAGAATTGCAATGCAAAAAGTGATCTGTTGATTCTAAATCGTGTAATG
+TCGCGTCACGAATGTAAACCGTGTATCCTTTATTTCCGTTTGATGCGTGTTCCACGTCCG
+GCAAGCCTCCGTGCACTGACAAAACGACGGCAACGAGTTTTATGTCCAGAATACATGAAA
+ATTTATGTATACGGATATCTTGAGCTCATGGAGCCAGCCAACGGAAAAGCGATCAAACGG
+CTTGGAATTGGAAAAGAAAAAGAAGAAGACGATGATATTATGGTGGTCGACGACTGCCTT
+CTCCGTAAACCATCAGGCCCCTACATTGTGGAGCAATCGATTGAAGCTGATCCAATCGAT
+GAGAATACGTGCAGAATGACACGGTGCTTCGATACACCGGCTGCACTGGCATTAATTGAT
+AATATCAAGAGAAAACATCATATGTGTGTTCCACTTGTTTGGAGAGTTAAACAAACGAAA
+TGTATGGAGGAGAACGAAATTCTGAATGAAGAAGCCCGTCAACAAATGTTCCGTGCAACA
+ATGACATACAGCCGTGTACCAAAAGGAGAAATTGCAAATTGGAAGAAAGATATGATGGCG
+TTGAAGGGAAGATTCGAGAGATTTACTCCTGAACTAGATACTACTGCAACAAATGGCAAT
+CGATCTGGAAAAGTCAGGATAAATTATGGTTGGAGTCCTGAGGAAAAGAAGAATGCTATT
+AGATGTTTCCACTGGTACAAGGACAATTTCGAGTTGATCGCCGAGTTGATGGCCACAAAA
+ACTGTGGAACAAATCAAAAAGTTCTATATGGACAATGAAAAGCTAATTTTGGAGTCAATC
+GACACGTATCGCGCCGAGCTCAAGTCAAAACTCGGCAAATAA
+>Y74C9A.4d cds chromosome:WBcel235:I:17483:24796:-1 gene:WBGene00022278 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rcor-1 description:RCOR (REST CO-Repressor) homolog  [Source:RefSeq peptide;Acc:NP_001293207]
+ATGTCGCGTCACGAATGTAAACCGTGTATCCTTTATTTCCGTTTGATGCGTGTTCCACGT
+CCGGCAAGCCTCCGTGCACTGACAAAACGACGGCAACGAGTTTTATGTCCAGAATACATG
+AAAATTTATGTATACGGATATCTTGAGCTCATGGAGCCAGCCAACGGAAAAGCGATCAAA
+CGGCTTGGAATTGGAAAAGAAAAAGAAGAAGACGATGATATTATGGTGGTCGACGACTGC
+CTTCTCCGTAAACCATCAGGCCCCTACATTGTGGAGCAATCGATTGAAGCTGATCCAATC
+GATGAGAATACGTGCAGAATGACACGGTGCTTCGATACACCGGCTGCACTGGCATTAATT
+GATAATATCAAGAGAAAACATCATATGTGTGTTCCACTTGTTTGGAGAGTTAAACAAACG
+AAATGTATGGAGGAGAACGAAATTCTGAATGAAGAAGCCCGTCAACAAATGTTCCGTGCA
+ACAATGACATACAGCCGTGTACCAAAAGGAGAAATTGCAAATTGGAAGAAAGATATGATG
+GCGTTGAAGGGAAGATTCGAGAGATTTACTCCTGAACTAGATACTACTGCAACAAATGGC
+AATCGATCTGGAAAAGTCAGGATAAATTATGGTTGGAGTCCTGAGGAAAAGAAGAATGCT
+ATTAGATGTTTCCACTGGTACAAGGACAATTTCGAGTTGATCGCCGAGTTGATGGCCACA
+AAAACTGTGGAACAAATCAAAAAGTTCTATATGGACAATGAAAAGCTAATTTTGGAGTCA
+ATCGACACGTATCGCGCCGAGCTCAAGTCAAAACTCGGCAAATAA